JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LPL_chr8_19934253_19972259	0/0	c0004	4517	22	2	0	18	0	2	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0005	4519	12	6	1	5	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0006	4519	10	10	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0007	4516	8	1	2	3	0	2	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0008	4519	6	5	1	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0009	4520	6	6	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0010	4518	6	6	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0011	4519	5	0	3	0	1	1	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0012	4519	5	4	0	0	1	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0013	4519	4	2	2	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0014	4519	4	4	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0015	4519	4	0	0	4	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0016	4520	4	4	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0017	4518	4	0	3	0	0	1	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0018	4519	3	1	2	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0019	4519	3	1	2	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0020	4520	2	2	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0021	4519	2	2	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0022	4518	2	1	1	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0023	4520	2	0	2	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0024	4519	2	1	1	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0025	4519	2	2	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0026	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0027	4520	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0028	4520	1	0	1	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0029	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0030	4518	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0031	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0032	4517	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0033	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0034	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0035	4520	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0036	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0037	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0038	4519	1	0	0	1	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0039	4519	1	0	0	0	1	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0040	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0041	4520	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0042	4519	1	0	0	0	0	1	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0043	4518	1	0	0	1	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0044	4519	1	0	1	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0045	4519	1	0	1	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0046	4520	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0047	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0048	4518	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0049	4518	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0050	4520	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0051	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0052	4519	1	0	0	0	0	1	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0053	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259