JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKLE1_chr19_17276901_17292646	0/0	c0004	1848	13	11	2	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0005	1848	12	11	1	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0006	1848	8	2	4	0	1	1	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0007	1848	5	0	4	0	0	1	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0008	1848	5	4	1	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0009	1848	4	0	0	4	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0010	1848	3	0	3	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0011	1848	3	3	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0012	1848	2	0	2	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0013	1848	2	2	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0014	1848	2	2	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0015	1848	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0016	1848	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0017	1848	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0018	1848	1	0	1	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0019	1848	1	0	1	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0020	1848	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0021	1848	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0022	1848	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0023	1848	1	0	0	0	0	1	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0024	1848	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0025	1848	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0026	1848	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0027	1848	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0028	1848	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0029	1848	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0030	1848	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0031	1848	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0032	1848	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/1	c0033	1848	1	0	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE2_chr12_132720503_132766832	1/0	c0001	2817	208	49	32	97	6	23	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/1	c0002	2817	60	7	17	17	4	14	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0003	2817	16	9	6	0	1	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0004	2817	12	0	1	10	0	1	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0005	2817	12	0	2	6	0	4	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0006	2817	6	0	3	1	0	2	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0007	2817	4	3	1	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0008	2817	4	0	0	4	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0009	2817	3	3	0	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0010	2817	3	2	1	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0011	2817	3	3	0	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0012	2817	3	0	0	0	0	3	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0013	2817	2	2	0	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0014	2817	2	1	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0015	2817	2	0	0	2	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0016	2817	1	0	0	0	0	1	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0017	2817	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0018	2817	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0019	2817	1	0	1	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0020	2817	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832