JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LPL_chr8_19934253_19972259	0/0	c0054	4518	1	0	0	1	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0055	4518	1	0	1	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0056	4518	1	0	0	0	1	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0057	4517	1	0	0	1	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0058	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0059	4518	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0060	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0061	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0062	4518	1	0	1	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0063	4517	1	0	0	1	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0064	4516	1	0	0	0	1	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0065	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0066	4516	1	0	0	1	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0067	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0068	4518	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0069	4520	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0070	4519	1	1	0	0	0	0	copy fasta	LPL	chr8	19934253	19972259
LPO_chr17_58233584_58273518	1/1	c0001	2139	188	48	35	78	8	17	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0002	2139	58	11	10	31	3	3	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0003	2139	40	13	3	21	1	2	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0004	2139	11	11	0	0	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0005	2139	9	1	4	4	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0006	2139	6	1	3	0	0	2	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0007	2139	2	2	0	0	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0008	2139	2	2	0	0	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0009	2139	2	0	0	2	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0010	2139	2	0	0	2	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0011	2139	2	2	0	0	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0012	2139	2	2	0	0	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0013	2139	1	0	0	1	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0014	2139	1	0	1	0	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0015	2139	1	1	0	0	0	0	copy fasta	LPO	chr17	58233584	58273518
LPO_chr17_58233584_58273518	0/0	c0016	2139	1	0	0	1	0	0	copy fasta	LPO	chr17	58233584	58273518
LPP_chr3_188149157_188895671	0/0	c0001	1839	15	1	5	2	1	6	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	1/0	c0002	1839	13	4	3	3	0	2	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	c0003	1839	13	10	3	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	c0004	1839	7	5	2	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/1	c0005	1839	6	0	1	1	1	2	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	c0006	1839	5	0	3	0	0	2	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	c0007	1839	3	3	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	c0008	1839	2	2	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	c0009	1839	2	2	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	c0010	1839	2	1	1	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	c0011	1839	2	2	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	c0012	1839	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	c0013	1839	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	c0014	1839	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	c0015	1839	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	c0016	1839	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671
LPP_chr3_188149157_188895671	0/0	c0017	1839	1	1	0	0	0	0	copy fasta	LPP	chr3	188149157	188895671