JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LPXN_chr11_58521871_58580856	1/1	c0001	1161	174	52	30	71	4	15	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	c0002	1161	130	21	27	64	5	13	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	c0003	1161	11	9	2	0	0	0	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	c0004	1161	5	0	0	4	1	0	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	c0005	1161	5	4	1	0	0	0	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	c0006	1161	1	1	0	0	0	0	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	c0007	1161	1	0	0	1	0	0	copy fasta	LPXN	chr11	58521871	58580856
LPXN_chr11_58521871_58580856	0/0	c0008	1161	1	1	0	0	0	0	copy fasta	LPXN	chr11	58521871	58580856
LRATD1_chr2_14627717_14645041	1/1	c0001	879	403	91	73	176	16	45	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	c0002	879	8	7	1	0	0	0	copy fasta	LRATD1	chr2	14627717	14645041
LRATD1_chr2_14627717_14645041	0/0	c0003	879	1	0	0	0	0	1	copy fasta	LRATD1	chr2	14627717	14645041
LRATD2_chr8_126547443_126563478	1/1	c0001	933	418	81	74	210	16	35	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	c0002	933	11	11	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	c0003	933	2	2	0	0	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	c0004	933	2	0	0	2	0	0	copy fasta	LRATD2	chr8	126547443	126563478
LRATD2_chr8_126547443_126563478	0/0	c0005	933	1	0	0	0	0	1	copy fasta	LRATD2	chr8	126547443	126563478
LRAT_chr4_154739000_154758120	1/1	c0001	693	359	59	72	166	14	46	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	c0002	693	32	30	2	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	c0003	693	3	3	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	c0004	693	2	2	0	0	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	c0005	693	1	0	0	1	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRAT_chr4_154739000_154758120	0/0	c0006	693	1	0	0	1	0	0	copy fasta	LRAT	chr4	154739000	154758120
LRBA_chr4_150259435_151020284	1/0	c0001	8559	98	36	6	46	4	5	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0002	8559	10	9	1	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0003	8559	10	0	2	7	0	1	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0004	8559	7	0	1	6	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0005	8559	4	0	0	3	0	1	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0006	8559	4	0	0	4	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0007	8559	3	2	1	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0008	8559	3	3	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0009	8559	2	0	0	2	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0010	8559	2	2	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/1	c0011	8559	2	0	1	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0012	8559	2	0	0	2	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0013	8559	2	2	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0014	8559	2	2	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0015	8559	2	1	1	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0016	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0017	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0018	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0019	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0020	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0021	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0022	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0023	8559	1	0	1	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0024	8559	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0025	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0026	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0027	8559	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0028	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284