JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRBA_chr4_150259435_151020284	0/0	c0029	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0030	8559	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0031	8559	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0032	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0033	8559	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0034	8559	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0035	8559	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0036	8559	1	0	0	1	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0037	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0038	8559	1	0	1	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0039	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0040	8559	1	0	0	0	0	1	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0041	8559	1	1	0	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRBA_chr4_150259435_151020284	0/0	c0042	8559	1	0	1	0	0	0	copy fasta	LRBA	chr4	150259435	151020284
LRCH1_chr13_46548170_46749898	0/0	c0001	2292	172	34	39	68	9	22	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/1	c0002	2292	31	8	5	14	1	2	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0003	2292	23	12	0	8	0	3	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0004	2292	8	7	1	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0005	2292	7	0	0	7	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0006	2292	5	5	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0007	2292	4	2	0	2	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0008	2292	4	3	1	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0009	2292	4	1	0	2	0	1	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0010	2292	3	3	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0011	2292	2	0	2	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0012	2292	2	1	1	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0013	2292	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0014	2292	1	0	1	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0015	2292	1	0	0	1	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0016	2292	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	1/0	c0017	2292	1	0	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0018	2292	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0019	2292	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0020	2292	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH1_chr13_46548170_46749898	0/0	c0021	2292	1	1	0	0	0	0	copy fasta	LRCH1	chr13	46548170	46749898
LRCH2_chrX_115105616_115239096	1/0	c0001	2298	229	70	38	85	5	30	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	c0002	2298	2	0	2	0	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	c0003	2298	1	1	0	0	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	c0004	2298	1	0	1	0	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	c0005	2298	1	1	0	0	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	c0006	2299	1	0	0	1	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	c0007	2298	1	0	0	1	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/0	c0008	2297	1	0	1	0	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH2_chrX_115105616_115239096	0/1	c0009	2298	1	0	0	0	0	0	copy fasta	LRCH2	chrX	115105616	115239096
LRCH3_chr3_197786254_197893436	1/1	c0001	2334	139	43	34	36	4	20	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0002	2334	69	5	18	33	5	8	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0003	2334	26	5	3	12	1	5	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0004	2334	24	11	5	0	2	6	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0005	2334	8	3	2	3	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0006	2334	5	1	1	3	0	0	copy fasta	LRCH3	chr3	197786254	197893436