JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRCH3_chr3_197786254_197893436	0/0	c0007	2334	4	2	0	1	0	1	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0008	2334	4	0	0	4	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0009	2334	2	0	0	2	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0010	2334	2	1	1	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0011	2334	1	0	0	1	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0012	2334	1	1	0	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0013	2334	1	1	0	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0014	2334	1	0	0	1	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0015	2334	1	0	0	1	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0016	2331	1	1	0	0	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0017	2334	1	0	0	1	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0018	2334	1	0	0	1	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH3_chr3_197786254_197893436	0/0	c0019	2334	1	0	0	1	0	0	copy fasta	LRCH3	chr3	197786254	197893436
LRCH4_chr7_100569011_100591129	0/1	c0001	2052	239	75	21	101	12	29	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	1/0	c0002	2052	86	3	23	42	4	13	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0003	2052	14	0	10	0	1	3	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0004	2052	10	6	3	0	0	1	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0005	2052	4	4	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0006	2052	2	0	0	1	0	1	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0007	2052	2	2	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0008	2052	2	2	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0009	2052	1	0	0	0	1	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0010	2052	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0011	2052	1	0	0	0	0	1	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0012	2052	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0013	2052	1	0	1	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0014	2052	1	1	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0015	2052	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0016	2052	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0017	2052	1	1	0	0	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0018	2052	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCH4_chr7_100569011_100591129	0/0	c0019	2052	1	0	0	1	0	0	copy fasta	LRCH4	chr7	100569011	100591129
LRCOL1_chr12_132598151_132615582	0/0	c0001	480	196	39	40	83	10	24	copy fasta	LRCOL1	chr12	132598151	132615582
LRCOL1_chr12_132598151_132615582	1/1	c0002	480	97	15	19	38	3	20	copy fasta	LRCOL1	chr12	132598151	132615582
LRCOL1_chr12_132598151_132615582	0/0	c0003	480	84	34	15	30	3	2	copy fasta	LRCOL1	chr12	132598151	132615582
LRCOL1_chr12_132598151_132615582	0/0	c0004	480	7	6	1	0	0	0	copy fasta	LRCOL1	chr12	132598151	132615582
LRCOL1_chr12_132598151_132615582	0/0	c0005	480	3	0	0	3	0	0	copy fasta	LRCOL1	chr12	132598151	132615582
LRCOL1_chr12_132598151_132615582	0/0	c0006	480	2	2	0	0	0	0	copy fasta	LRCOL1	chr12	132598151	132615582
LRCOL1_chr12_132598151_132615582	0/0	c0007	480	1	0	1	0	0	0	copy fasta	LRCOL1	chr12	132598151	132615582
LRFN1_chr19_39301566_39325863	1/1	c0001	2316	247	60	50	97	13	25	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	c0002	2316	14	14	0	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	c0003	2316	4	4	0	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	c0004	2316	3	3	0	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	c0005	2316	2	0	0	2	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	c0006	2316	2	2	0	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	c0007	2316	1	0	0	1	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	c0008	2316	1	0	0	1	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	c0009	2316	1	0	0	0	0	1	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	c0010	2316	1	0	0	0	1	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN1_chr19_39301566_39325863	0/0	c0011	2316	1	1	0	0	0	0	copy fasta	LRFN1	chr19	39301566	39325863