JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRFN1_chr19_39301566_39325863	0/0	c0012	2316	1	0	0	1	0	0	copy fasta	LRFN1	chr19	39301566	39325863
LRFN2_chr6_40386591_40592364	0/1	c0001	2370	104	36	15	34	4	14	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	1/0	c0002	2370	60	6	11	31	7	4	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0003	2370	16	2	7	7	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0004	2370	12	12	0	0	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0005	2370	12	8	2	0	1	1	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0006	2370	6	0	0	6	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0007	2370	3	0	0	3	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0008	2370	2	1	1	0	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0009	2370	2	2	0	0	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0010	2370	2	0	0	2	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0011	2370	1	1	0	0	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0012	2370	1	1	0	0	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0013	2370	1	0	0	1	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0014	2370	1	0	0	1	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0015	2370	1	1	0	0	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0016	2370	1	0	0	0	0	1	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0017	2370	1	1	0	0	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0018	2370	1	1	0	0	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN2_chr6_40386591_40592364	0/0	c0019	2370	1	0	0	1	0	0	copy fasta	LRFN2	chr6	40386591	40592364
LRFN3_chr19_35931374_35951624	1/1	c0001	1887	323	44	75	151	15	36	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0002	1887	30	13	0	16	0	1	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0003	1887	25	19	3	0	2	1	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0004	1887	11	0	0	9	1	1	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0005	1887	6	0	0	6	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0006	1887	6	0	0	6	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0007	1887	2	2	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0008	1887	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0009	1887	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0010	1887	1	0	0	0	0	1	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0011	1887	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0012	1887	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0013	1887	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0014	1887	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0015	1887	1	0	0	1	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0016	1887	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0017	1887	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0018	1887	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0019	1887	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0020	1887	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0021	1887	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN3_chr19_35931374_35951624	0/0	c0022	1887	1	1	0	0	0	0	copy fasta	LRFN3	chr19	35931374	35951624
LRFN4_chr11_66852064_66865475	1/0	c0001	1908	299	66	45	151	9	27	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/1	c0002	1908	48	1	17	22	4	3	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0003	1908	8	2	1	2	0	3	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0004	1908	6	6	0	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0005	1908	5	5	0	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0006	1908	3	2	1	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0007	1908	2	0	0	2	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0008	1908	2	0	0	2	0	0	copy fasta	LRFN4	chr11	66852064	66865475