JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRFN4_chr11_66852064_66865475	0/0	c0009	1908	2	2	0	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0010	1908	2	2	0	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0011	1908	1	0	0	1	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0012	1908	1	0	0	0	0	1	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0013	1908	1	1	0	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0014	1908	1	0	1	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0015	1908	1	1	0	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0016	1908	1	0	0	0	0	1	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0017	1908	1	0	0	0	0	1	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0018	1908	1	0	0	1	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0019	1908	1	0	0	1	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0020	1908	1	0	1	0	0	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN4_chr11_66852064_66865475	0/0	c0021	1908	1	0	0	0	1	0	copy fasta	LRFN4	chr11	66852064	66865475
LRFN5_chr14_41601876_41909549	0/1	c0001	2160	178	54	38	64	4	17	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	1/0	c0002	2160	96	27	24	34	2	8	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	c0003	2160	2	2	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	c0004	2160	1	0	0	0	0	1	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	c0005	2160	1	1	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	c0006	2160	1	1	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRFN5_chr14_41601876_41909549	0/0	c0007	2160	1	1	0	0	0	0	copy fasta	LRFN5	chr14	41601876	41909549
LRG1_chr19_4531402_4545036	1/0	c0001	1044	234	51	49	88	11	34	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/1	c0002	1044	142	7	34	81	5	14	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	c0003	1044	22	22	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	c0004	1044	8	8	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	c0005	1044	5	5	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	c0006	1044	2	2	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	c0007	1044	2	0	0	0	0	2	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	c0008	1044	1	1	0	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	c0009	1044	1	0	1	0	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	c0010	1044	1	0	0	1	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	c0011	1044	1	0	0	1	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRG1_chr19_4531402_4545036	0/0	c0012	1044	1	0	0	1	0	0	copy fasta	LRG1	chr19	4531402	4545036
LRGUK_chr7_134122340_134269595	0/1	c0001	2478	97	25	13	33	5	20	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0002	2478	36	0	7	25	0	4	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0003	2478	30	11	3	13	0	3	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0004	2478	15	0	9	6	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0005	2478	6	4	2	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0006	2478	5	0	0	5	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0007	2478	4	2	2	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0008	2478	3	3	0	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0009	2478	3	0	0	3	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0010	2478	2	0	1	0	1	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0011	2478	2	0	0	2	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0012	2478	2	0	2	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0013	2478	1	1	0	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0014	2478	1	1	0	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0015	2478	1	1	0	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0016	2478	1	0	0	1	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	1/0	c0017	2478	1	0	0	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0018	2478	1	1	0	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595