JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRGUK_chr7_134122340_134269595	0/0	c0019	2478	1	0	0	1	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0020	2478	1	0	0	1	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0021	2478	1	0	0	0	0	1	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0022	2478	1	0	0	1	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0023	2478	1	0	0	1	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0024	2478	1	0	0	1	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0025	2478	1	0	1	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0026	2478	1	0	0	1	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRGUK_chr7_134122340_134269595	0/0	c0027	2478	1	1	0	0	0	0	copy fasta	LRGUK	chr7	134122340	134269595
LRIF1_chr1_110942190_110968922	1/0	c0001	2310	388	75	62	205	10	35	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/1	c0002	2310	51	15	6	12	4	13	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	c0003	2310	2	1	1	0	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	c0004	2310	1	0	1	0	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	c0005	2310	1	0	0	1	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	c0006	2310	1	0	0	1	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	c0007	2310	1	0	0	1	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIF1_chr1_110942190_110968922	0/0	c0008	2310	1	1	0	0	0	0	copy fasta	LRIF1	chr1	110942190	110968922
LRIG1_chr3_66373797_66506022	0/0	c0001	3282	49	3	12	30	0	4	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/1	c0002	3282	40	4	14	12	3	6	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0003	3282	18	4	1	3	1	9	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0004	3282	15	9	4	2	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	1/0	c0005	3282	15	3	1	10	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0006	3282	12	12	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0007	3282	12	0	10	0	1	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0008	3282	11	4	0	5	0	2	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0009	3282	8	7	1	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0010	3282	7	7	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0011	3282	6	1	1	2	1	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0012	3282	5	4	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0013	3282	5	0	1	3	0	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0014	3282	5	0	1	3	0	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0015	3282	3	3	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0016	3282	3	3	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0017	3282	3	0	0	3	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0018	3282	3	0	0	3	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0019	3282	2	2	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0020	3282	2	1	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0021	3282	2	0	0	2	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0022	3282	2	0	1	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0023	3282	2	2	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0024	3282	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0025	3282	1	0	1	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0026	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0027	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0028	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0029	3282	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0030	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0031	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0032	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0033	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022