JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRIG1_chr3_66373797_66506022	0/0	c0034	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0035	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0036	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0037	3282	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0038	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0039	3282	1	0	0	0	0	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0040	3282	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0041	3282	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0042	3282	1	0	0	0	0	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0043	3282	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0044	3282	1	0	0	0	0	1	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0045	3282	1	0	0	0	1	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0046	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0047	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0048	3282	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0049	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0050	3282	1	0	0	0	1	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0051	3282	1	0	1	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0052	3282	1	1	0	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0053	3282	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0054	3282	1	0	1	0	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0055	3282	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0056	3282	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG1_chr3_66373797_66506022	0/0	c0057	3282	1	0	0	1	0	0	copy fasta	LRIG1	chr3	66373797	66506022
LRIG2_chr1_113068198_113137260	0/1	c0001	3198	216	51	47	82	12	23	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	1/0	c0002	3198	14	13	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	c0003	3198	14	12	2	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	c0004	3198	6	6	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	c0005	3198	6	0	2	4	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	c0006	3198	2	0	2	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	c0007	3198	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	c0008	3198	1	0	1	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	c0009	3198	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	c0010	3198	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	c0011	3198	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	c0012	3198	1	0	0	0	0	1	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	c0013	3198	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	c0014	3198	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	c0015	3198	1	1	0	0	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG2_chr1_113068198_113137260	0/0	c0016	3198	1	0	0	1	0	0	copy fasta	LRIG2	chr1	113068198	113137260
LRIG3_chr12_58867155_58925504	1/0	c0001	3360	140	33	18	67	5	16	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0002	3360	42	10	7	22	0	3	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0003	3360	13	0	0	13	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/1	c0004	3360	13	0	6	4	1	1	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0005	3360	12	11	1	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0006	3360	9	1	3	3	1	1	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0007	3360	8	7	0	1	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0008	3357	4	4	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0009	3360	4	0	1	1	2	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0010	3360	4	2	0	0	1	1	copy fasta	LRIG3	chr12	58867155	58925504