JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRIG3_chr12_58867155_58925504	0/0	c0011	3360	3	0	0	3	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0012	3360	2	0	0	2	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0013	3360	2	2	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0014	3360	2	2	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0015	3360	2	0	0	2	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0016	3360	2	0	2	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0017	3360	1	0	0	1	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0018	3360	1	0	0	0	0	1	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0019	3360	1	1	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0020	3360	1	1	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0021	3360	1	1	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0022	3360	1	0	1	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0023	3360	1	1	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0024	3360	1	0	1	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0025	3372	1	0	0	1	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0026	3360	1	1	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0027	3357	1	1	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0028	3360	1	0	0	1	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0029	3360	1	1	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0030	3360	1	0	0	1	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0031	3360	1	1	0	0	0	0	copy fasta	LRIG3	chr12	58867155	58925504
LRIG3_chr12_58867155_58925504	0/0	c0032	3360	1	0	0	0	0	1	copy fasta	LRIG3	chr12	58867155	58925504
LRIT1_chr10_84226520_84246546	0/0	c0001	1872	165	9	35	97	5	19	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/1	c0002	1872	88	23	25	22	5	12	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0003	1872	56	40	4	10	0	2	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0004	1872	32	3	3	24	1	1	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0005	1872	19	0	3	11	1	4	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0006	1872	17	2	3	11	1	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0007	1872	8	7	1	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0008	1872	4	4	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0009	1872	3	0	0	3	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0010	1872	3	0	0	3	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0011	1872	2	2	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0012	1872	2	0	0	0	1	1	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0013	1872	2	2	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0014	1872	2	2	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0015	1872	1	0	0	1	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0016	1872	1	0	0	1	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0017	1872	1	0	0	1	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	1/0	c0018	1872	1	0	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0019	1872	1	0	0	0	0	1	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0020	1872	1	0	0	1	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0021	1872	1	0	0	1	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0022	1872	1	1	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0023	1872	1	0	0	1	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0024	1872	1	1	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0025	1872	1	0	0	1	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0026	1872	1	1	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0027	1872	1	0	0	0	0	1	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0028	1872	1	0	1	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546