JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRIT1_chr10_84226520_84246546	0/0	c0029	1872	1	0	0	0	0	1	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0030	1872	1	1	0	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT1_chr10_84226520_84246546	0/0	c0031	1872	1	0	1	0	0	0	copy fasta	LRIT1	chr10	84226520	84246546
LRIT2_chr10_84215571_84230544	1/1	c0001	1653	198	21	37	100	10	28	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0002	1653	91	52	17	11	4	7	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0003	1653	46	2	15	25	2	2	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0004	1653	33	1	4	22	1	5	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0005	1653	20	0	2	18	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0006	1653	15	14	1	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0007	1653	3	0	0	0	0	3	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0008	1653	2	0	2	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0009	1653	2	1	1	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0010	1653	1	1	0	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0011	1653	1	0	0	1	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0012	1653	1	1	0	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0013	1653	1	0	0	1	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0014	1653	1	0	0	0	1	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0015	1653	1	0	1	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0016	1653	1	0	0	0	0	1	copy fasta	LRIT2	chr10	84215571	84230544
LRIT2_chr10_84215571_84230544	0/0	c0017	1653	1	1	0	0	0	0	copy fasta	LRIT2	chr10	84215571	84230544
LRIT3_chr4_109843107_109877315	0/0	c0001	2040	98	24	14	49	3	8	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/1	c0002	2040	92	7	21	46	3	14	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	1/0	c0003	2040	55	14	13	20	0	7	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0004	2040	28	27	1	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0005	2040	24	0	0	22	0	2	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0006	2040	9	7	2	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0007	2040	5	1	2	0	1	1	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0008	2040	4	0	0	4	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0009	2040	3	0	0	0	3	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0010	2040	3	3	0	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0011	2040	2	0	0	2	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0012	2040	2	1	1	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0013	2040	1	0	0	0	0	1	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0014	2040	1	1	0	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0015	2040	1	0	0	1	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0016	2040	1	0	0	1	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0017	2040	1	1	0	0	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0018	2040	1	0	0	1	0	0	copy fasta	LRIT3	chr4	109843107	109877315
LRIT3_chr4_109843107_109877315	0/0	c0019	2040	1	0	0	0	0	1	copy fasta	LRIT3	chr4	109843107	109877315
LRMDA_chr10_75426624_76565168	0/0	c0001	681	23	16	6	1	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	c0002	681	17	14	2	1	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	c0003	681	2	2	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	c0004	681	2	2	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	c0005	681	1	1	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRMDA_chr10_75426624_76565168	0/0	c0006	681	1	1	0	0	0	0	copy fasta	LRMDA	chr10	75426624	76565168
LRP10_chr14_22866740_22886713	1/1	c0001	2142	316	79	77	108	10	40	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0002	2142	16	2	2	11	0	1	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0003	2142	7	0	0	7	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0004	2142	5	5	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0005	2142	4	4	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713