JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKLE2_chr12_132720503_132766832	0/0	c0021	2817	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0022	2817	1	0	0	0	1	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0023	2817	1	1	0	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0024	2817	1	0	1	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	c0025	2817	1	0	1	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKMY1_chr2_240474422_240562988	1/0	c0001	3093	120	33	22	42	6	16	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0002	3093	54	13	19	21	1	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0003	3093	23	7	3	9	2	2	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0004	3093	17	7	6	2	2	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0005	3093	16	2	4	6	0	4	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/1	c0006	3093	14	3	3	3	0	4	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0007	3093	13	8	3	0	2	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0008	3093	11	0	2	2	0	7	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0009	3093	4	0	0	3	0	1	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0010	3093	4	1	2	0	1	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0011	3093	4	3	1	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0012	3093	2	0	0	0	1	1	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0013	3093	2	2	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0014	3093	2	1	0	0	0	1	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0015	3093	2	0	2	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0016	3093	2	1	0	0	0	1	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0017	3093	2	0	0	2	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0018	3093	2	2	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0019	3093	2	2	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0020	3093	2	0	2	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0021	3093	1	0	1	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0022	3093	1	1	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0023	3093	1	0	1	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0024	3093	1	0	0	1	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0025	3093	1	1	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0026	3093	1	0	0	1	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0027	3093	1	1	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0028	3093	1	0	0	1	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0029	3093	1	0	0	0	1	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0030	3093	1	1	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0031	3093	1	0	0	1	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0032	3093	1	0	0	0	0	1	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0033	3093	1	0	0	1	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0034	3093	1	1	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0035	3093	1	0	0	1	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0036	3093	1	1	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0037	3093	1	0	1	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0038	3093	1	1	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0039	3093	1	0	1	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0040	3093	1	0	1	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0041	3093	1	0	0	1	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	c0042	3093	1	0	0	1	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY2_chr7_16594779_16650754	1/1	c0001	1326	189	46	33	80	3	25	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0002	1326	62	5	11	30	4	12	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	c0003	1326	47	25	11	8	0	3	copy fasta	ANKMY2	chr7	16594779	16650754