JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRP10_chr14_22866740_22886713	0/0	c0006	2142	3	0	0	3	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0007	2142	3	0	0	3	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0008	2142	2	0	0	2	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0009	2142	2	2	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0010	2142	2	2	0	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0011	2142	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0012	2142	1	0	1	0	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0013	2142	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0014	2142	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0015	2142	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0016	2142	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0017	2142	1	0	0	0	0	1	copy fasta	LRP10	chr14	22866740	22886713
LRP10_chr14_22866740_22886713	0/0	c0018	2142	1	0	0	1	0	0	copy fasta	LRP10	chr14	22866740	22886713
LRP11_chr6_149813757_149869359	0/1	c0001	1503	173	21	27	98	8	18	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	1/0	c0002	1503	119	47	23	29	4	15	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0003	1503	17	10	0	3	0	4	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0004	1503	5	5	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0005	1503	3	3	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0006	1503	3	0	0	3	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0007	1503	2	0	0	0	2	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0008	1503	2	0	2	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0009	1503	2	0	2	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0010	1503	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0011	1503	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0012	1503	1	0	0	1	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0013	1503	1	0	0	0	0	1	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0014	1503	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0015	1503	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0016	1503	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP11_chr6_149813757_149869359	0/0	c0017	1503	1	1	0	0	0	0	copy fasta	LRP11	chr6	149813757	149869359
LRP12_chr8_104484236_104594258	1/1	c0001	2580	294	52	65	132	14	29	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	c0002	2580	8	8	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	c0003	2580	6	5	1	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	c0004	2580	6	6	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	c0005	2580	1	0	0	1	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	c0006	2580	1	0	0	0	0	1	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	c0007	2580	1	1	0	0	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP12_chr8_104484236_104594258	0/0	c0008	2580	1	0	0	1	0	0	copy fasta	LRP12	chr8	104484236	104594258
LRP1B_chr2_140226423_142136016	0/0	c0001	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0002	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0003	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0004	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0005	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0006	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0007	13800	1	0	1	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0008	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0009	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0010	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0011	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0012	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016