JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRP1B_chr2_140226423_142136016	0/0	c0013	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0014	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0015	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0016	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0017	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0018	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0019	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0020	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0021	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0022	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0023	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0024	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0025	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0026	13800	1	0	1	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0027	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1B_chr2_140226423_142136016	0/0	c0028	13800	1	1	0	0	0	0	copy fasta	LRP1B	chr2	140226423	142136016
LRP1_chr12_57123483_57218361	0/0	c0001	13635	64	17	17	20	4	6	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0002	13635	61	7	14	30	3	7	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0003	13635	18	1	1	12	0	4	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0004	13635	10	0	4	5	0	1	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0005	13635	7	0	0	7	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0006	13635	6	5	1	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0007	13635	6	6	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0008	13635	6	5	1	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0009	13635	5	1	1	3	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0010	13635	5	1	0	4	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0011	13635	4	2	2	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0012	13635	4	0	0	4	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0013	13635	3	0	0	3	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0014	13635	3	0	0	3	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0015	13635	3	3	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0016	13635	3	2	1	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0017	13635	3	3	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0018	13635	2	2	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0019	13635	2	0	1	0	1	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0020	13635	2	2	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0021	13635	2	2	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0022	13635	2	0	1	0	0	1	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0023	13635	2	2	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0024	13635	2	2	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0025	13635	2	2	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0026	13635	2	2	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0027	13635	2	0	0	1	0	1	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0028	13635	2	2	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0029	13635	2	0	0	2	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0030	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0031	13635	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0032	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0033	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0034	13635	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361