JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRP1_chr12_57123483_57218361	0/0	c0035	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	1/0	c0036	13635	1	0	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0037	13635	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0038	13635	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0039	13812	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0040	13635	1	0	0	0	0	1	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0041	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0042	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0043	13635	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0044	13635	1	0	0	0	0	1	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0045	13635	1	0	1	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0046	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0047	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0048	13635	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0049	13635	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0050	13635	1	0	0	0	0	1	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0051	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/1	c0052	13635	1	0	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0053	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0054	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0055	13635	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0056	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0057	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0058	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0059	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0060	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0061	13635	1	0	0	0	0	1	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0062	13635	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0063	13635	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0064	13635	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0065	13635	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0066	13635	1	0	0	1	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0067	13635	1	0	1	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0068	13635	1	0	0	0	0	1	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0069	13635	1	0	0	0	0	1	copy fasta	LRP1	chr12	57123483	57218361
LRP1_chr12_57123483_57218361	0/0	c0070	13635	1	1	0	0	0	0	copy fasta	LRP1	chr12	57123483	57218361
LRP2BP_chr4_185358872_185400924	1/1	c0001	1044	195	36	40	79	10	28	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	c0002	1044	95	34	21	32	2	6	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	c0003	1044	55	24	5	17	2	7	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	c0004	1044	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	c0005	1044	1	0	0	0	0	1	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2BP_chr4_185358872_185400924	0/0	c0006	1044	1	1	0	0	0	0	copy fasta	LRP2BP	chr4	185358872	185400924
LRP2_chr2_169122109_169367534	0/0	c0001	13968	7	0	2	4	1	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0002	13968	5	2	2	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/1	c0003	13968	5	0	1	2	1	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0004	13968	4	0	0	4	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0005	13968	4	0	0	4	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0006	13968	4	0	2	0	2	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0007	13968	4	2	0	2	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0008	13968	4	0	1	3	0	0	copy fasta	LRP2	chr2	169122109	169367534