JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRP2_chr2_169122109_169367534	0/0	c0009	13968	4	0	0	2	0	2	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0010	13968	4	0	4	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0011	13968	4	1	0	3	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0012	13968	3	0	0	3	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0013	13968	3	0	1	1	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0014	13968	3	3	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0015	13968	3	1	0	2	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0016	13968	2	2	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0017	13968	2	0	2	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0018	13968	2	0	1	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0019	13968	2	2	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0020	13968	2	0	0	2	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0021	13968	2	0	2	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0022	13968	2	0	0	1	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0023	13968	2	1	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0024	13968	2	0	0	1	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0025	13968	2	2	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0026	13968	2	2	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0027	13968	2	0	2	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0028	13968	2	2	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0029	13968	2	0	1	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0030	13968	2	0	0	2	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0031	13968	2	2	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0032	13968	2	0	0	0	2	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0033	13968	2	0	0	1	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0034	13968	2	0	1	0	1	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0035	13968	2	0	0	2	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0036	13968	2	0	1	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0037	13968	2	0	0	2	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0038	13968	1	0	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0039	13968	1	0	0	0	1	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0040	13968	1	0	0	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0041	13968	1	0	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0042	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0043	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0044	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0045	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0046	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0047	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0048	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0049	13968	1	0	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0050	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0051	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0052	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0053	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0054	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0055	13968	1	0	0	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0056	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0057	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0058	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534