JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRP2_chr2_169122109_169367534	0/0	c0109	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0110	13968	1	0	0	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0111	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0112	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0113	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0114	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0115	13968	1	0	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0116	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0117	13968	1	0	0	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0118	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0119	13968	1	0	0	0	1	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0120	13968	1	0	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0121	13968	1	0	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0122	13968	1	0	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0123	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0124	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0125	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0126	13968	1	0	0	0	1	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0127	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0128	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0129	13968	1	0	0	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0130	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0131	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0132	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0133	13968	1	0	0	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0134	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0135	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0136	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0137	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0138	13968	1	0	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0139	13968	1	0	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0140	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0141	13968	1	0	0	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0142	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0143	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0144	13968	1	0	0	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0145	13968	1	0	0	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0146	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0147	13968	1	0	0	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0148	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0149	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0150	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0151	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0152	13968	1	0	0	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0153	13968	1	0	0	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0154	13968	1	0	0	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0155	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0156	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0157	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0158	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534