JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRP2_chr2_169122109_169367534	0/0	c0159	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0160	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0161	13968	1	0	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0162	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0163	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0164	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0165	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0166	13968	1	0	1	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0167	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0168	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0169	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0170	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0171	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0172	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0173	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0174	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0175	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0176	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0177	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0178	13968	1	0	0	1	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	1/0	c0179	13968	1	0	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0180	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0181	13968	1	1	0	0	0	0	copy fasta	LRP2	chr2	169122109	169367534
LRP2_chr2_169122109_169367534	0/0	c0182	13968	1	0	0	0	0	1	copy fasta	LRP2	chr2	169122109	169367534
LRP3_chr19_33189330_33213864	0/1	c0001	2313	89	17	21	33	2	15	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0002	2313	85	33	23	3	8	18	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	1/0	c0003	2313	60	25	1	30	1	2	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0004	2313	44	0	9	30	3	2	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0005	2313	43	0	10	32	1	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0006	2313	23	5	3	7	1	7	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0007	2313	18	0	0	18	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0008	2313	13	0	0	13	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0009	2313	6	6	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0010	2313	5	5	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0011	2313	4	0	0	4	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0012	2313	3	3	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0013	2313	2	2	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0014	2313	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0015	2313	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0016	2313	1	1	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0017	2313	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0018	2313	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0019	2313	1	0	0	0	0	1	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0020	2313	1	0	0	0	0	1	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0021	2313	1	0	1	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0022	2313	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0023	2313	1	0	1	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0024	2313	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0025	2313	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0026	2313	1	0	1	0	0	0	copy fasta	LRP3	chr19	33189330	33213864