JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRP3_chr19_33189330_33213864	0/0	c0027	2313	1	1	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0028	2313	1	1	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0029	2313	1	1	0	0	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP3_chr19_33189330_33213864	0/0	c0030	2313	1	0	0	1	0	0	copy fasta	LRP3	chr19	33189330	33213864
LRP4_chr11_46851717_46923550	0/1	c0001	5718	71	1	16	47	1	5	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0002	5718	65	11	15	26	3	10	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0003	5718	35	28	3	0	1	3	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0004	5718	22	5	4	11	0	2	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0005	5718	15	14	1	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0006	5718	11	1	2	5	1	2	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0007	5718	7	7	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0008	5718	6	0	0	6	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0009	5718	5	0	3	0	0	2	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0010	5718	4	0	0	4	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	1/0	c0011	5718	4	3	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0012	5718	3	2	1	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0013	5718	3	3	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0014	5718	2	2	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0015	5718	2	0	2	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0016	5718	2	1	0	0	0	1	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0017	5718	1	0	1	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0018	5718	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0019	5718	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0020	5718	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0021	5718	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0022	5718	1	0	0	1	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0023	5718	1	0	0	1	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0024	5718	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0025	5718	1	0	0	1	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0026	5718	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0027	5718	1	0	1	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0028	5718	1	0	0	0	0	1	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0029	5718	1	0	1	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0030	5718	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0031	5718	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0032	5718	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0033	5718	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0034	5718	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP4_chr11_46851717_46923550	0/0	c0035	5718	1	1	0	0	0	0	copy fasta	LRP4	chr11	46851717	46923550
LRP5_chr11_68307591_68454275	0/1	c0001	4848	58	8	17	24	3	5	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	1/0	c0002	4848	27	14	7	4	1	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0003	4848	22	2	3	17	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0004	4848	18	16	0	2	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0005	4848	8	8	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0006	4851	6	6	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0007	4848	6	6	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0008	4848	6	0	0	6	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0009	4848	5	3	0	2	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0010	4848	5	0	5	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0011	4851	3	0	2	0	1	0	copy fasta	LRP5	chr11	68307591	68454275