JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRP5_chr11_68307591_68454275	0/0	c0012	4851	3	1	2	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0013	4848	3	0	1	0	2	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0014	4851	2	2	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0015	4851	2	1	1	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0016	4851	2	2	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0017	4848	2	2	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0018	4848	2	0	2	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0019	4848	2	2	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0020	4848	2	2	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0021	4848	1	0	1	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0022	4851	1	0	1	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0023	4851	1	0	0	0	0	1	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0024	4851	1	0	1	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0025	4848	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0026	4848	1	1	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0027	4848	1	1	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0028	4848	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0029	4848	1	1	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0030	4848	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0031	4848	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0032	4848	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0033	4848	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0034	4848	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0035	4848	1	1	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0036	4848	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0037	4848	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0038	4848	1	1	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0039	4848	1	0	0	0	1	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0040	4848	1	1	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0041	4848	1	1	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0042	4848	1	1	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0043	4848	1	1	0	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0044	4836	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0045	4848	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0046	4848	1	0	1	0	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0047	4848	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP5_chr11_68307591_68454275	0/0	c0048	4848	1	0	0	1	0	0	copy fasta	LRP5	chr11	68307591	68454275
LRP6_chr12_12111025_12272044	0/1	c0001	4842	137	27	27	58	4	20	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	1/0	c0002	4842	31	4	8	13	2	3	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0003	4842	29	27	0	2	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0004	4842	20	4	5	8	2	1	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0005	4842	16	1	9	2	2	2	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0006	4842	8	7	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0007	4842	4	0	0	4	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0008	4842	2	2	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0009	4842	2	2	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0010	4842	2	2	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0011	4842	2	0	0	0	2	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0012	4842	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0013	4842	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044