JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRP6_chr12_12111025_12272044	0/0	c0014	4842	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0015	4842	1	1	0	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0016	4842	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0017	4842	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0018	4842	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0019	4842	1	0	1	0	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP6_chr12_12111025_12272044	0/0	c0020	4842	1	0	0	1	0	0	copy fasta	LRP6	chr12	12111025	12272044
LRP8_chr1_53237364_53333070	0/0	c0001	2892	108	59	13	21	1	14	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	1/0	c0002	2892	44	2	23	6	1	11	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0003	2892	39	0	3	36	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0004	2892	39	10	2	27	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0005	2892	18	2	5	6	3	2	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0006	2892	10	2	0	7	0	1	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/1	c0007	2892	5	0	2	0	0	2	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0008	2892	5	5	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0009	2892	4	1	0	3	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0010	2889	2	0	0	2	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0011	2892	2	0	2	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0012	2892	2	0	1	0	1	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0013	2895	2	0	1	0	1	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0014	2889	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0015	2892	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0016	2892	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0017	2892	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0018	2892	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0019	2892	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0020	2892	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0021	2892	1	0	0	0	1	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0022	2892	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0023	2892	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0024	2892	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0025	2892	1	0	1	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0026	2892	1	1	0	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0027	2892	1	0	1	0	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0028	2892	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRP8_chr1_53237364_53333070	0/0	c0029	2895	1	0	0	1	0	0	copy fasta	LRP8	chr1	53237364	53333070
LRPAP1_chr4_3498612_3537422	1/1	c0001	1074	343	69	58	166	10	38	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0002	1074	20	5	9	0	1	5	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0003	1074	18	5	5	5	0	3	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0004	1074	5	4	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0005	1074	5	0	3	0	0	2	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0006	1074	4	4	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0007	1074	3	3	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0008	1074	3	0	2	0	1	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0009	1074	3	0	3	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0010	1074	2	0	0	0	0	2	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0011	1074	2	0	0	2	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0012	1074	2	0	2	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0013	1074	2	2	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0014	1074	2	0	0	2	0	0	copy fasta	LRPAP1	chr4	3498612	3537422