JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRPAP1_chr4_3498612_3537422	0/0	c0015	1074	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0016	1074	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0017	1074	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0018	1074	1	0	1	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0019	1074	1	1	0	0	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPAP1_chr4_3498612_3537422	0/0	c0020	1074	1	0	0	1	0	0	copy fasta	LRPAP1	chr4	3498612	3537422
LRPPRC_chr2_43881224_44000989	1/0	c0001	4185	104	22	13	58	1	9	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0002	4185	95	0	16	62	4	13	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/1	c0003	4185	94	25	35	14	8	11	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0004	4185	10	10	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0005	4185	10	9	1	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0006	4185	9	4	0	5	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0007	4185	6	6	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0008	4185	4	0	3	0	0	1	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0009	4185	2	0	0	2	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0010	4185	2	0	2	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0011	4185	2	1	1	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0012	4185	2	0	1	0	1	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0013	4185	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0014	4185	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0015	4185	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0016	4185	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0017	4185	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0018	4185	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0019	4185	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0020	4185	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0021	4185	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0022	4185	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0023	4185	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0024	4185	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0025	4185	1	0	1	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0026	4185	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0027	4185	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0028	4185	1	0	0	1	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0029	4185	1	1	0	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRPPRC_chr2_43881224_44000989	0/0	c0030	4185	1	0	1	0	0	0	copy fasta	LRPPRC	chr2	43881224	44000989
LRR1_chr14_49593940_49619672	1/1	c0001	1245	235	52	50	86	11	34	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	c0002	1245	51	20	20	5	3	3	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	c0003	1245	9	9	0	0	0	0	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	c0004	1245	9	9	0	0	0	0	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	c0005	1245	2	2	0	0	0	0	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	c0006	1245	2	2	0	0	0	0	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	c0007	1245	1	0	1	0	0	0	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	c0008	1245	1	0	1	0	0	0	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	c0009	1245	1	0	0	0	0	1	copy fasta	LRR1	chr14	49593940	49619672
LRR1_chr14_49593940_49619672	0/0	c0010	1245	1	0	0	1	0	0	copy fasta	LRR1	chr14	49593940	49619672
LRRC10B_chr11_61503749_61516018	1/1	c0001	879	274	95	54	79	13	31	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	c0002	879	131	0	17	100	1	13	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	c0003	879	3	3	0	0	0	0	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	c0004	879	1	0	0	0	0	1	copy fasta	LRRC10B	chr11	61503749	61516018