JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC10B_chr11_61503749_61516018	0/0	c0005	879	1	0	0	0	0	1	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	c0006	879	1	0	1	0	0	0	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10B_chr11_61503749_61516018	0/0	c0007	879	1	0	0	1	0	0	copy fasta	LRRC10B	chr11	61503749	61516018
LRRC10_chr12_69603564_69615907	1/1	c0001	834	405	94	72	183	14	40	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	c0002	834	17	0	0	17	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	c0003	834	1	0	0	1	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	c0004	834	1	0	0	1	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	c0005	834	1	1	0	0	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	c0006	834	1	0	0	1	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	c0007	834	1	0	0	1	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	c0008	834	1	1	0	0	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	c0009	834	1	0	1	0	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC10_chr12_69603564_69615907	0/0	c0010	834	1	0	1	0	0	0	copy fasta	LRRC10	chr12	69603564	69615907
LRRC14B_chr5_186495_201334	1/1	c0001	1545	391	51	77	209	11	41	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0002	1545	48	33	9	0	4	2	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0003	1545	8	7	1	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0004	1545	4	0	0	4	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0005	1545	3	3	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0006	1545	2	2	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0007	1545	2	0	0	0	0	2	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0008	1545	2	2	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0009	1545	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0010	1545	1	0	0	0	1	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0011	1545	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0012	1545	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0013	1545	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0014	1545	1	0	0	0	0	1	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0015	1545	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0016	1545	1	0	1	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0017	1545	1	0	0	1	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14B_chr5_186495_201334	0/0	c0018	1545	1	1	0	0	0	0	copy fasta	LRRC14B	chr5	186495	201334
LRRC14_chr8_144512992_144530172	0/1	c0001	1482	343	83	76	129	16	38	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	1/0	c0002	1482	48	0	4	43	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	c0003	1482	8	8	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	c0004	1482	4	4	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	c0005	1482	2	0	0	2	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	c0006	1482	1	0	1	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	c0007	1482	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	c0008	1482	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	c0009	1482	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	c0010	1482	1	0	1	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	c0011	1482	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	c0012	1482	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	c0013	1482	1	0	0	1	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC14_chr8_144512992_144530172	0/0	c0014	1482	1	1	0	0	0	0	copy fasta	LRRC14	chr8	144512992	144530172
LRRC15_chr3_194350249_194374743	1/0	c0001	1746	254	72	45	100	7	29	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/1	c0002	1746	44	5	12	22	1	3	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0003	1746	21	4	2	5	4	6	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0004	1746	5	3	2	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0005	1746	4	4	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743