JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC15_chr3_194350249_194374743	0/0	c0006	1746	4	0	0	3	0	1	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0007	1746	3	0	1	0	0	2	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0008	1746	3	3	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0009	1746	3	0	0	3	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0010	1746	2	2	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0011	1746	2	2	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0012	1746	2	0	0	2	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0013	1746	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0014	1746	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0015	1746	1	0	1	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0016	1746	1	0	1	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0017	1746	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0018	1746	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0019	1746	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0020	1746	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0021	1746	1	1	0	0	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0022	1746	1	0	0	1	0	0	copy fasta	LRRC15	chr3	194350249	194374743
LRRC15_chr3_194350249_194374743	0/0	c0023	1746	1	0	0	0	0	1	copy fasta	LRRC15	chr3	194350249	194374743
LRRC17_chr7_102908000_102950111	0/1	c0001	1323	191	39	46	74	12	19	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	c0002	1326	80	17	12	41	3	7	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	1/0	c0003	1326	59	26	2	29	0	1	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	c0004	1326	42	0	2	32	1	7	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	c0005	1326	17	1	0	11	0	5	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	c0006	1326	2	2	0	0	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	c0007	1323	1	0	0	0	0	1	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	c0008	1326	1	0	1	0	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	c0009	1323	1	0	1	0	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	c0010	1326	1	0	0	1	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	c0011	1323	1	1	0	0	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	c0012	1323	1	1	0	0	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC17_chr7_102908000_102950111	0/0	c0013	1326	1	1	0	0	0	0	copy fasta	LRRC17	chr7	102908000	102950111
LRRC18_chr10_48904480_48944840	0/0	c0001	786	167	8	18	115	9	17	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	1/1	c0002	786	134	27	32	51	4	18	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0003	786	24	16	7	0	1	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0004	786	19	2	6	0	4	7	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0005	786	16	14	2	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0006	786	15	7	4	4	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0007	786	13	10	3	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0008	786	11	0	1	9	0	1	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0009	786	5	1	2	0	0	2	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0010	786	4	0	1	3	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0011	786	3	3	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0012	786	2	2	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0013	786	1	0	0	0	0	1	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0014	786	1	1	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0015	786	1	1	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0016	786	1	0	1	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0017	786	1	1	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0018	786	1	1	0	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840
LRRC18_chr10_48904480_48944840	0/0	c0019	786	1	0	1	0	0	0	copy fasta	LRRC18	chr10	48904480	48944840