JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC19_chr9_26988136_27010672	1/1	c0001	1113	358	84	69	141	16	46	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	c0002	1113	15	2	4	5	1	3	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	c0003	1113	6	0	4	0	1	1	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	c0004	1113	4	4	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	c0005	1113	3	3	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	c0006	1113	2	0	0	2	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	c0007	1113	1	1	0	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC19_chr9_26988136_27010672	0/0	c0008	1113	1	0	1	0	0	0	copy fasta	LRRC19	chr9	26988136	27010672
LRRC1_chr6_53790005_53929125	1/1	c0001	1575	288	81	56	105	10	34	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	c0002	1575	52	0	19	29	2	2	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	c0003	1575	8	0	0	7	0	1	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	c0004	1575	4	4	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	c0005	1575	4	2	1	0	0	1	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	c0006	1575	3	0	0	3	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	c0007	1575	3	3	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	c0008	1575	2	0	0	2	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	c0009	1575	1	1	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	c0010	1575	1	0	0	1	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	c0011	1575	1	1	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	c0012	1575	1	1	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	c0013	1575	1	1	0	0	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC1_chr6_53790005_53929125	0/0	c0014	1575	1	0	0	1	0	0	copy fasta	LRRC1	chr6	53790005	53929125
LRRC20_chr10_70293975_70387625	1/1	c0001	555	375	89	76	157	12	39	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	c0002	555	1	0	0	0	0	1	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	c0003	555	1	0	0	1	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC20_chr10_70293975_70387625	0/0	c0004	555	1	1	0	0	0	0	copy fasta	LRRC20	chr10	70293975	70387625
LRRC23_chr12_6899822_6919229	1/0	c0001	1032	156	15	38	68	9	25	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/1	c0002	1032	109	39	16	32	5	16	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	c0003	1032	21	0	0	21	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	c0004	1032	15	11	2	2	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	c0005	1032	5	5	0	0	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	c0006	1032	3	0	0	2	0	1	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	c0007	1032	2	0	0	2	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	c0008	1032	2	2	0	0	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	c0009	1032	1	0	0	1	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	c0010	1032	1	0	0	1	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC23_chr12_6899822_6919229	0/0	c0011	1032	1	0	0	1	0	0	copy fasta	LRRC23	chr12	6899822	6919229
LRRC24_chr8_144517388_144532033	1/0	c0001	1542	162	29	29	80	7	16	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/1	c0002	1542	161	8	50	69	7	26	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0003	1542	38	35	2	0	0	1	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0004	1542	9	9	0	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0005	1542	7	7	0	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0006	1542	3	3	0	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0007	1542	2	2	0	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0008	1542	2	2	0	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0009	1542	2	0	0	2	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0010	1542	2	0	0	0	2	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0011	1542	2	2	0	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0012	1542	1	0	0	0	0	1	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0013	1542	1	0	1	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033