JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC24_chr8_144517388_144532033	0/0	c0014	1542	1	1	0	0	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0015	1542	1	0	0	1	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0016	1542	1	0	0	1	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0017	1542	1	0	0	1	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0018	1542	1	0	0	1	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC24_chr8_144517388_144532033	0/0	c0019	1542	1	0	0	1	0	0	copy fasta	LRRC24	chr8	144517388	144532033
LRRC25_chr19_18386137_18402622	0/1	c0001	918	289	80	56	110	11	31	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	1/0	c0002	918	129	10	17	79	7	15	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	c0003	918	6	6	0	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	c0004	918	4	0	0	4	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	c0005	918	2	2	0	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	c0006	918	1	1	0	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	c0007	918	1	0	1	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	c0008	918	1	0	0	1	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC25_chr19_18386137_18402622	0/0	c0009	918	1	1	0	0	0	0	copy fasta	LRRC25	chr19	18386137	18402622
LRRC26_chr9_137163758_137175051	1/0	c0001	1005	202	52	29	98	8	14	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	c0002	1005	92	31	24	27	4	6	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/1	c0003	1005	46	3	19	2	4	17	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	c0004	1005	34	1	8	19	1	5	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	c0005	1005	12	0	0	12	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	c0006	1005	6	1	0	0	1	4	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	c0007	1005	2	0	2	0	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	c0008	1005	2	0	0	2	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	c0009	1005	2	2	0	0	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	c0010	1005	2	2	0	0	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	c0011	1005	1	1	0	0	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	c0012	1005	1	0	0	1	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	c0013	1005	1	0	0	1	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC26_chr9_137163758_137175051	0/0	c0014	1005	1	1	0	0	0	0	copy fasta	LRRC26	chr9	137163758	137175051
LRRC27_chr10_132327193_132386508	0/1	c0001	1593	178	55	35	71	5	11	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	1/0	c0002	1593	59	2	16	30	4	6	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0003	1593	19	11	4	0	2	2	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0004	1593	11	4	3	0	3	1	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0005	1593	4	4	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0006	1593	3	2	1	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0007	1593	2	2	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0008	1593	2	0	2	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0009	1593	2	2	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0010	1593	2	0	2	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0011	1593	2	0	0	0	0	2	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0012	1593	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0013	1593	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0014	1593	1	0	0	1	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0015	1593	1	0	1	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0016	1593	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC27_chr10_132327193_132386508	0/0	c0017	1593	1	1	0	0	0	0	copy fasta	LRRC27	chr10	132327193	132386508
LRRC28_chr15_99246481_99395729	1/1	c0001	1104	319	79	49	141	8	40	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	c0002	1104	10	9	1	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	c0003	1104	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC28_chr15_99246481_99395729	0/0	c0004	1104	1	0	0	1	0	0	copy fasta	LRRC28	chr15	99246481	99395729