JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC28_chr15_99246481_99395729	0/0	c0005	1104	1	1	0	0	0	0	copy fasta	LRRC28	chr15	99246481	99395729
LRRC2_chr3_46510385_46571302	1/1	c0001	1116	251	79	46	102	5	17	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	c0002	1116	54	4	10	24	4	12	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	c0003	1116	31	1	8	14	1	7	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	c0004	1116	19	3	4	12	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	c0005	1116	3	3	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	c0006	1116	2	0	0	0	0	2	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	c0007	1116	1	0	0	1	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	c0008	1116	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	c0009	1116	1	0	0	1	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC2_chr3_46510385_46571302	0/0	c0010	1116	1	1	0	0	0	0	copy fasta	LRRC2	chr3	46510385	46571302
LRRC30_chr18_7226089_7237044	1/1	c0001	906	448	92	76	216	12	50	copy fasta	LRRC30	chr18	7226089	7237044
LRRC30_chr18_7226089_7237044	0/0	c0002	906	2	2	0	0	0	0	copy fasta	LRRC30	chr18	7226089	7237044
LRRC30_chr18_7226089_7237044	0/0	c0003	906	1	0	1	0	0	0	copy fasta	LRRC30	chr18	7226089	7237044
LRRC30_chr18_7226089_7237044	0/0	c0004	906	1	0	0	1	0	0	copy fasta	LRRC30	chr18	7226089	7237044
LRRC30_chr18_7226089_7237044	0/0	c0005	906	1	0	1	0	0	0	copy fasta	LRRC30	chr18	7226089	7237044
LRRC30_chr18_7226089_7237044	0/0	c0006	906	1	1	0	0	0	0	copy fasta	LRRC30	chr18	7226089	7237044
LRRC30_chr18_7226089_7237044	0/0	c0007	906	1	0	0	1	0	0	copy fasta	LRRC30	chr18	7226089	7237044
LRRC30_chr18_7226089_7237044	0/0	c0008	906	1	1	0	0	0	0	copy fasta	LRRC30	chr18	7226089	7237044
LRRC31_chr3_169834172_169874935	0/0	c0001	1659	144	42	25	56	3	18	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	1/0	c0002	1659	117	36	21	37	6	16	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	c0003	1659	19	0	10	4	3	2	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	c0004	1659	11	0	2	9	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	c0005	1659	6	0	0	6	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	c0006	1659	6	0	0	6	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	c0007	1659	4	4	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	c0008	1659	4	4	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	c0009	1659	2	0	0	2	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	c0010	1484	2	0	0	0	0	2	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	c0011	1659	1	1	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	c0012	1659	1	1	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	c0013	1659	1	0	0	0	0	1	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/1	c0014	1659	1	0	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	c0015	1659	1	1	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	c0016	1659	1	1	0	0	0	0	copy fasta	LRRC31	chr3	169834172	169874935
LRRC31_chr3_169834172_169874935	0/0	c0017	1484	1	0	0	0	0	1	copy fasta	LRRC31	chr3	169834172	169874935
LRRC32_chr11_76652524_76675747	0/1	c0001	1989	257	56	50	117	8	25	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	1/0	c0002	1989	82	2	15	56	1	7	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0003	1989	52	15	12	11	3	11	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0004	1989	19	0	0	19	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0005	1989	17	17	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0006	1989	4	0	0	1	1	2	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0007	1989	3	2	1	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0008	1989	2	0	0	0	2	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0009	1989	2	0	2	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0010	1989	2	2	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0011	1989	2	0	2	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0012	1989	2	0	0	2	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0013	1989	1	0	0	1	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0014	1989	1	0	0	0	0	1	copy fasta	LRRC32	chr11	76652524	76675747