JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC32_chr11_76652524_76675747	0/0	c0015	1989	1	1	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0016	1989	1	0	0	0	0	1	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0017	1989	1	1	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0018	1989	1	0	0	1	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0019	1989	1	0	0	0	0	1	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0020	1989	1	0	0	0	1	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0021	1989	1	1	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC32_chr11_76652524_76675747	0/0	c0022	1989	1	1	0	0	0	0	copy fasta	LRRC32	chr11	76652524	76675747
LRRC34_chr3_169788003_169817904	1/1	c0001	1395	153	44	28	56	5	18	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	c0002	1395	103	3	14	75	1	10	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	c0003	1395	28	23	1	2	0	2	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	c0004	1395	18	1	3	13	0	1	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	c0005	1390	7	6	1	0	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	c0006	1395	5	4	1	0	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	c0007	1395	2	0	2	0	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	c0008	1395	1	1	0	0	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	c0009	1395	1	1	0	0	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	c0010	1395	1	1	0	0	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	c0011	1395	1	0	0	1	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	c0012	1395	1	0	0	1	0	0	copy fasta	LRRC34	chr3	169788003	169817904
LRRC34_chr3_169788003_169817904	0/0	c0013	1395	1	0	0	0	0	1	copy fasta	LRRC34	chr3	169788003	169817904
LRRC36_chr16_67321815_67390204	1/1	c0001	2265	127	32	32	35	7	19	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	c0002	2265	31	30	1	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	c0003	2265	25	18	3	0	1	3	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	c0004	2265	3	2	1	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	c0005	2265	1	1	0	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	c0006	2265	1	1	0	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	c0007	2265	1	0	0	1	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	c0008	2265	1	1	0	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	c0009	2265	1	1	0	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	c0010	2265	1	1	0	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	c0011	1953	1	1	0	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC36_chr16_67321815_67390204	0/0	c0012	2265	1	0	1	0	0	0	copy fasta	LRRC36	chr16	67321815	67390204
LRRC37A2_chr17_46507468_46560646	0/0	c0001	5103	18	5	3	3	3	4	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0002	5103	12	0	4	5	3	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0003	5103	12	0	5	5	1	1	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0004	5103	10	0	4	0	2	4	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0005	5103	10	10	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0006	5103	9	3	3	3	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0007	5103	4	0	2	0	0	2	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0008	5103	3	1	1	0	0	1	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0009	5103	2	1	1	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0010	5103	2	0	0	2	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0011	5103	2	0	2	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0012	5103	2	2	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0013	5103	1	0	1	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0014	5103	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0015	5103	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0016	5103	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0017	5103	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646