JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC37A2_chr17_46507468_46560646	0/0	c0018	5103	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0019	5103	1	0	1	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0020	5103	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0021	5103	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0022	5103	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0023	5103	1	0	0	1	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0024	5103	1	0	0	1	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0025	5103	1	0	0	1	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0026	5103	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0027	5103	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0028	5103	1	0	0	1	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0029	5103	1	0	1	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0030	5103	1	0	0	1	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0031	5103	1	0	0	0	1	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0032	5103	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/1	c0033	5103	1	0	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0034	5103	1	1	0	0	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A2_chr17_46507468_46560646	0/0	c0035	5103	1	0	0	1	0	0	copy fasta	LRRC37A2	chr17	46507468	46560646
LRRC37A3_chr17_64849130_64924478	1/1	c0001	4905	77	23	17	26	0	9	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0002	4905	15	14	1	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0003	4905	8	7	1	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0004	4905	5	5	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0005	4905	4	3	1	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0006	4905	3	3	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0007	4905	3	3	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0008	4905	2	2	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0009	4905	2	2	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0010	4905	2	2	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0011	4905	2	2	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0012	4905	2	2	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0013	4905	2	2	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0014	4905	1	0	0	1	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0015	4905	1	0	0	1	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0016	4905	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0017	4905	1	0	0	0	0	1	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0018	4905	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0019	4905	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0020	4905	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0021	4905	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0022	4905	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0023	4905	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A3_chr17_64849130_64924478	0/0	c0024	4905	1	1	0	0	0	0	copy fasta	LRRC37A3	chr17	64849130	64924478
LRRC37A_chr17_46290131_46342794	0/0	c0001	5103	21	9	0	11	0	1	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	c0002	5103	10	1	2	6	0	1	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	1/0	c0003	5103	9	8	0	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	c0004	5103	2	2	0	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	c0005	5103	2	1	0	1	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	c0006	5103	1	1	0	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	c0007	5103	1	1	0	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	c0008	5103	1	1	0	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794