JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC37A_chr17_46290131_46342794	0/0	c0009	5103	1	1	0	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	c0010	5103	1	0	1	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	c0011	5103	1	0	0	1	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	c0012	5103	1	1	0	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	c0013	5103	1	0	0	1	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	c0014	5103	1	0	0	1	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	c0015	5103	1	0	1	0	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37A_chr17_46290131_46342794	0/0	c0016	5103	1	0	0	1	0	0	copy fasta	LRRC37A	chr17	46290131	46342794
LRRC37B_chr17_32002383_32058487	1/1	c0001	2598	175	62	36	55	4	16	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0002	2598	20	0	9	0	4	7	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0003	2598	17	0	2	8	0	7	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0004	2598	6	6	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0005	2598	4	4	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0006	2598	4	0	4	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0007	2598	2	2	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0008	2598	2	0	2	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0009	2598	2	2	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0010	2598	1	1	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0011	2598	1	0	0	0	0	1	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0012	2598	1	0	0	1	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0013	2598	1	1	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0014	2598	1	0	0	1	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0015	2598	1	1	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0016	2598	1	0	0	0	0	1	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0017	2598	1	0	1	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0018	2598	1	0	0	1	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC37B_chr17_32002383_32058487	0/0	c0019	2598	1	1	0	0	0	0	copy fasta	LRRC37B	chr17	32002383	32058487
LRRC38_chr1_13469973_13519003	1/0	c0001	885	207	42	42	82	12	28	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	c0002	885	124	21	14	69	4	16	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	c0003	885	74	9	8	51	2	4	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	c0004	885	23	23	0	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	c0005	885	11	0	11	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	c0006	885	1	0	0	1	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	c0007	885	1	0	0	1	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/1	c0008	885	1	0	0	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	c0009	885	1	0	0	0	0	1	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	c0010	885	1	1	0	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	c0011	885	1	1	0	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	c0012	885	1	1	0	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	c0013	885	1	0	0	0	0	1	copy fasta	LRRC38	chr1	13469973	13519003
LRRC38_chr1_13469973_13519003	0/0	c0014	885	1	0	1	0	0	0	copy fasta	LRRC38	chr1	13469973	13519003
LRRC39_chr1_100143448_100183256	1/1	c0001	1008	268	69	55	95	13	34	copy fasta	LRRC39	chr1	100143448	100183256
LRRC39_chr1_100143448_100183256	0/0	c0002	1008	11	7	2	1	1	0	copy fasta	LRRC39	chr1	100143448	100183256
LRRC39_chr1_100143448_100183256	0/0	c0003	1005	5	4	1	0	0	0	copy fasta	LRRC39	chr1	100143448	100183256
LRRC39_chr1_100143448_100183256	0/0	c0004	1008	2	2	0	0	0	0	copy fasta	LRRC39	chr1	100143448	100183256
LRRC39_chr1_100143448_100183256	0/0	c0005	1008	1	1	0	0	0	0	copy fasta	LRRC39	chr1	100143448	100183256
LRRC39_chr1_100143448_100183256	0/0	c0006	1008	1	1	0	0	0	0	copy fasta	LRRC39	chr1	100143448	100183256
LRRC3B_chr3_26617772_26715776	1/1	c0001	780	304	76	56	130	11	29	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3B_chr3_26617772_26715776	0/0	c0002	780	62	12	12	34	1	3	copy fasta	LRRC3B	chr3	26617772	26715776
LRRC3B_chr3_26617772_26715776	0/0	c0003	780	2	0	2	0	0	0	copy fasta	LRRC3B	chr3	26617772	26715776