JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD11_chr16_89262630_89495561	0/0	c0024	7992	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0025	7992	1	0	1	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0026	7992	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0027	7992	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0028	7992	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0029	7992	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0030	7992	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0031	7992	1	0	1	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0032	7992	1	0	1	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0033	7992	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0034	7992	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0035	7992	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0036	7992	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0037	7992	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0038	7992	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0039	7992	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0040	7992	1	0	0	0	0	1	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0041	7992	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0042	7992	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0043	7992	1	0	0	0	1	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0044	7992	1	0	0	0	0	1	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0045	7992	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0046	7992	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0047	7992	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0048	7992	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0049	7992	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0050	8012	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0051	7992	1	0	0	0	0	1	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0052	7992	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0053	7992	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0054	7992	1	0	0	0	0	1	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0055	7992	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0056	7992	1	0	1	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0057	7992	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0058	7992	1	0	0	0	1	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	c0059	7992	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD12_chr18_9131781_9290985	0/1	c0001	6189	129	25	24	57	8	14	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	1/0	c0002	6189	74	34	13	16	3	7	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0003	6189	44	1	3	36	1	3	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0004	6189	33	7	2	22	1	1	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0005	6189	5	5	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0006	6189	5	0	4	0	1	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0007	6189	3	3	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0008	6189	2	1	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0009	6189	2	2	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0010	6189	2	0	0	0	0	2	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0011	6189	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0012	6189	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0013	6189	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0014	6189	1	0	0	0	0	1	copy fasta	ANKRD12	chr18	9131781	9290985