JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC45_chr17_82018305_82036151	0/0	c0009	2013	2	2	0	0	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0010	2013	2	0	2	0	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0011	2013	2	0	0	2	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0012	2013	1	1	0	0	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0013	2013	1	0	0	1	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0014	2013	1	0	1	0	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0015	2013	1	0	0	1	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0016	2013	1	0	0	0	0	1	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0017	1972	1	0	0	0	0	1	copy fasta	LRRC45	chr17	82018305	82036151
LRRC45_chr17_82018305_82036151	0/0	c0018	2013	1	1	0	0	0	0	copy fasta	LRRC45	chr17	82018305	82036151
LRRC46_chr17_47826670_47842719	1/1	c0001	966	371	84	79	147	17	42	copy fasta	LRRC46	chr17	47826670	47842719
LRRC46_chr17_47826670_47842719	0/0	c0002	954	18	15	3	0	0	0	copy fasta	LRRC46	chr17	47826670	47842719
LRRC46_chr17_47826670_47842719	0/0	c0003	966	1	0	0	0	1	0	copy fasta	LRRC46	chr17	47826670	47842719
LRRC46_chr17_47826670_47842719	0/0	c0004	966	1	1	0	0	0	0	copy fasta	LRRC46	chr17	47826670	47842719
LRRC46_chr17_47826670_47842719	0/0	c0005	966	1	0	0	1	0	0	copy fasta	LRRC46	chr17	47826670	47842719
LRRC47_chr1_3773559_3801498	1/1	c0001	1752	243	47	62	84	13	35	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0002	1752	74	2	5	64	1	2	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0003	1752	26	22	4	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0004	1752	24	13	4	4	3	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0005	1752	17	0	2	15	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0006	1752	14	0	2	1	0	11	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0007	1752	3	2	0	0	1	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0008	1752	1	0	0	1	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0009	1752	1	0	0	1	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0010	1752	1	0	0	0	0	1	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0011	1752	1	1	0	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0012	1752	1	1	0	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0013	1752	1	0	0	1	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0014	1752	1	0	0	1	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0015	1752	1	0	0	0	0	1	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0016	1752	1	0	1	0	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0017	1752	1	0	0	1	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC47_chr1_3773559_3801498	0/0	c0018	1752	1	0	0	1	0	0	copy fasta	LRRC47	chr1	3773559	3801498
LRRC49_chr15_70887826_71058658	1/1	c0001	2061	161	53	34	58	1	13	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	c0002	2058	85	10	23	46	1	5	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	c0003	2061	6	4	2	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	c0004	2061	4	0	0	4	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	c0005	2061	2	2	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	c0006	2061	1	0	0	1	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	c0007	2061	1	1	0	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	c0008	2058	1	0	1	0	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC49_chr15_70887826_71058658	0/0	c0009	2058	1	0	0	1	0	0	copy fasta	LRRC49	chr15	70887826	71058658
LRRC4B_chr19_50511892_50573435	1/1	c0001	2142	256	58	52	99	9	36	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	c0002	2142	57	16	14	11	6	10	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	c0003	2142	23	11	6	3	0	3	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	c0004	2142	17	1	5	11	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	c0005	2142	2	2	0	0	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	c0006	2142	1	0	1	0	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	c0007	2142	1	1	0	0	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	c0008	2142	1	0	0	0	1	0	copy fasta	LRRC4B	chr19	50511892	50573435