JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC4B_chr19_50511892_50573435	0/0	c0009	2142	1	1	0	0	0	0	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4B_chr19_50511892_50573435	0/0	c0010	2142	1	0	0	0	0	1	copy fasta	LRRC4B	chr19	50511892	50573435
LRRC4C_chr11_40109209_41464652	0/0	c0001	1923	34	28	3	2	0	1	copy fasta	LRRC4C	chr11	40109209	41464652
LRRC4C_chr11_40109209_41464652	0/0	c0002	1923	13	11	1	0	0	1	copy fasta	LRRC4C	chr11	40109209	41464652
LRRC4C_chr11_40109209_41464652	0/0	c0003	1923	1	1	0	0	0	0	copy fasta	LRRC4C	chr11	40109209	41464652
LRRC4_chr7_128022071_128036437	1/1	c0001	1962	223	46	42	100	10	23	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	c0002	1962	78	27	13	25	4	9	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	c0003	1962	52	4	18	19	2	9	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	c0004	1962	9	9	0	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	c0005	1962	8	8	0	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	c0006	1962	4	0	2	0	2	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	c0007	1962	1	0	0	0	0	1	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	c0008	1962	1	0	0	1	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	c0009	1962	1	0	0	1	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC4_chr7_128022071_128036437	0/0	c0010	1962	1	0	1	0	0	0	copy fasta	LRRC4	chr7	128022071	128036437
LRRC51_chr11_72075850_72101895	1/1	c0001	579	334	88	58	142	10	34	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	c0002	579	1	1	0	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC51_chr11_72075850_72101895	0/0	c0003	579	1	1	0	0	0	0	copy fasta	LRRC51	chr11	72075850	72101895
LRRC52_chr1_165539000_165568957	1/1	c0001	942	208	44	38	91	6	27	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	c0002	942	124	42	25	35	9	13	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	c0003	942	12	8	1	0	1	2	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	c0004	942	1	1	0	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	c0005	942	1	0	0	1	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	c0006	942	1	0	1	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	c0007	942	1	0	1	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	c0008	942	1	0	0	1	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC52_chr1_165539000_165568957	0/0	c0009	942	1	1	0	0	0	0	copy fasta	LRRC52	chr1	165539000	165568957
LRRC53_chr1_74464376_74517611	0/1	c0001	3744	150	33	24	63	7	22	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	1/0	c0002	3744	71	5	17	25	8	15	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0003	3744	29	18	0	7	0	4	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0004	3744	25	8	1	15	0	1	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0005	3744	18	0	1	17	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0006	3744	7	7	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0007	3744	6	0	0	6	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0008	3744	5	0	0	5	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0009	3744	5	5	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0010	3744	4	4	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0011	3744	4	2	2	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0012	3744	2	2	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0013	3744	2	0	0	2	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0014	3744	1	0	1	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0015	3744	1	0	1	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0016	3744	1	0	1	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0017	3744	1	1	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0018	3744	1	0	0	0	0	1	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0019	3744	1	0	0	0	0	1	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0020	3744	1	1	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0021	3744	1	1	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0022	3744	1	1	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0023	3744	1	0	0	1	0	0	copy fasta	LRRC53	chr1	74464376	74517611