JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC53_chr1_74464376_74517611	0/0	c0024	3744	1	0	0	0	1	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0025	3744	1	0	0	1	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0026	3744	1	1	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC53_chr1_74464376_74517611	0/0	c0027	3744	1	1	0	0	0	0	copy fasta	LRRC53	chr1	74464376	74517611
LRRC55_chr11_57176953_57196717	1/1	c0001	897	298	60	59	137	11	29	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	c0002	897	79	15	12	38	3	11	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	c0003	897	31	0	8	17	4	2	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	c0004	897	14	14	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	c0005	897	2	0	0	2	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	c0006	897	1	0	0	1	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	c0007	897	1	0	0	0	0	1	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	c0008	897	1	0	1	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	c0009	897	1	1	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	c0010	897	1	0	0	0	0	1	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	c0011	897	1	1	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	c0012	897	1	1	0	0	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC55_chr11_57176953_57196717	0/0	c0013	897	1	0	0	1	0	0	copy fasta	LRRC55	chr11	57176953	57196717
LRRC56_chr11_532527_559912	0/0	c0001	1629	193	28	38	93	10	24	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/1	c0002	1629	51	22	17	3	5	3	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0003	1629	48	19	7	11	1	10	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0004	1629	18	5	1	9	1	2	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0005	1629	12	0	1	11	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0006	1629	9	0	0	9	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0007	1629	8	8	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0008	1629	7	0	0	7	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0009	1629	5	0	4	0	1	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0010	1629	3	2	1	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0011	1629	3	0	3	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0012	1629	2	0	2	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0013	1629	2	2	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0014	1629	2	1	1	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0015	1629	2	2	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0016	1629	2	1	0	0	0	1	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0017	1629	2	2	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0018	1629	2	0	0	0	0	2	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0019	1629	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0020	1629	1	1	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0021	1629	1	1	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0022	1629	1	0	1	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0023	1629	1	0	0	0	0	1	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0024	1629	1	1	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0025	1629	1	1	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0026	1629	1	1	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0027	1629	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0028	1629	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0029	1629	1	1	0	0	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0030	1629	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0031	1629	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0032	1629	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC56_chr11_532527_559912	0/0	c0033	1629	1	0	0	0	0	1	copy fasta	LRRC56	chr11	532527	559912