JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC56_chr11_532527_559912	0/0	c0034	1629	1	0	0	1	0	0	copy fasta	LRRC56	chr11	532527	559912
LRRC57_chr15_42532829_42553793	1/1	c0001	720	351	87	64	143	11	44	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	c0002	720	3	3	0	0	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	c0003	720	1	0	0	1	0	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC57_chr15_42532829_42553793	0/0	c0004	736	1	0	0	0	1	0	copy fasta	LRRC57	chr15	42532829	42553793
LRRC58_chr3_120319509_120354354	1/0	c0001	1116	255	38	52	128	8	28	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	c0002	1116	69	31	12	16	0	10	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/1	c0003	1116	31	5	9	1	8	7	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	c0004	1116	8	8	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	c0005	1116	5	5	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	c0006	1116	3	3	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	c0007	1116	1	1	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	c0008	1116	1	1	0	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	c0009	1116	1	0	0	1	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	c0010	1116	1	0	0	0	0	1	copy fasta	LRRC58	chr3	120319509	120354354
LRRC58_chr3_120319509_120354354	0/0	c0011	1150	1	0	1	0	0	0	copy fasta	LRRC58	chr3	120319509	120354354
LRRC59_chr17_50376238_50402523	1/1	c0001	924	351	82	77	135	18	37	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	c0002	924	7	5	1	0	0	1	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	c0003	924	1	1	0	0	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC59_chr17_50376238_50402523	0/0	c0004	924	1	0	0	1	0	0	copy fasta	LRRC59	chr17	50376238	50402523
LRRC61_chr7_150318355_150343156	1/0	c0001	780	248	67	41	106	6	27	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/1	c0002	780	119	22	15	68	4	9	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	c0003	780	5	0	0	5	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	c0004	780	4	0	0	4	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	c0005	780	3	0	0	3	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	c0006	780	1	0	0	1	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	c0007	780	1	1	0	0	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	c0008	780	1	1	0	0	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	c0009	780	1	0	0	1	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	c0010	780	1	1	0	0	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	c0011	780	1	0	0	1	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC61_chr7_150318355_150343156	0/0	c0012	780	1	0	0	1	0	0	copy fasta	LRRC61	chr7	150318355	150343156
LRRC63_chr13_46206928_46282115	1/1	c0001	1764	265	37	51	131	16	28	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0002	1764	49	5	9	31	0	4	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0003	1764	12	1	3	7	0	1	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0004	1764	7	6	1	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0005	1764	6	6	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0006	1764	6	6	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0007	1764	6	5	1	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0008	1764	5	0	0	5	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0009	1764	5	5	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0010	1764	5	0	0	5	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0011	1764	4	3	1	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0012	1764	4	1	1	0	0	2	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0013	1764	2	2	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0014	1764	2	2	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0015	1764	2	2	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0016	1764	1	0	0	1	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0017	1764	1	1	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0018	1764	1	0	0	0	0	1	copy fasta	LRRC63	chr13	46206928	46282115