JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC63_chr13_46206928_46282115	0/0	c0019	1764	1	0	1	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0020	1764	1	1	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC63_chr13_46206928_46282115	0/0	c0021	1764	1	1	0	0	0	0	copy fasta	LRRC63	chr13	46206928	46282115
LRRC66_chr4_51988652_52025363	1/0	c0001	2643	307	67	61	129	16	33	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0002	2643	6	6	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0003	2643	3	3	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0004	2643	3	3	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0005	2643	2	2	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0006	2643	2	1	0	0	0	1	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/1	c0007	2643	2	0	1	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0008	2643	2	0	0	2	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0009	2643	1	0	0	1	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0010	2643	1	0	0	0	0	1	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0011	2643	1	1	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0012	2628	1	0	0	0	0	1	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0013	2643	1	1	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0014	2643	1	1	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0015	2643	1	0	0	1	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0016	2643	1	0	0	1	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC66_chr4_51988652_52025363	0/0	c0017	2643	1	1	0	0	0	0	copy fasta	LRRC66	chr4	51988652	52025363
LRRC69_chr8_91097619_91224257	1/1	c0001	1044	176	65	27	66	6	10	copy fasta	LRRC69	chr8	91097619	91224257
LRRC69_chr8_91097619_91224257	0/0	c0002	1044	131	16	21	74	6	14	copy fasta	LRRC69	chr8	91097619	91224257
LRRC69_chr8_91097619_91224257	0/0	c0003	1044	7	6	1	0	0	0	copy fasta	LRRC69	chr8	91097619	91224257
LRRC69_chr8_91097619_91224257	0/0	c0004	1044	1	0	0	1	0	0	copy fasta	LRRC69	chr8	91097619	91224257
LRRC69_chr8_91097619_91224257	0/0	c0005	1044	1	0	0	1	0	0	copy fasta	LRRC69	chr8	91097619	91224257
LRRC69_chr8_91097619_91224257	0/0	c0006	1044	1	1	0	0	0	0	copy fasta	LRRC69	chr8	91097619	91224257
LRRC69_chr8_91097619_91224257	0/0	c0007	1044	1	0	1	0	0	0	copy fasta	LRRC69	chr8	91097619	91224257
LRRC70_chr5_62573819_62586446	1/1	c0001	1869	432	81	75	215	16	43	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	c0002	1869	8	7	1	0	0	0	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	c0003	1869	2	0	0	0	0	2	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	c0004	1869	2	2	0	0	0	0	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	c0005	1869	1	0	0	1	0	0	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	c0006	1869	1	0	1	0	0	0	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	c0007	1869	1	0	0	1	0	0	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	c0008	1869	1	0	0	1	0	0	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	c0009	1869	1	0	0	0	0	1	copy fasta	LRRC70	chr5	62573819	62586446
LRRC70_chr5_62573819_62586446	0/0	c0010	1869	1	0	1	0	0	0	copy fasta	LRRC70	chr5	62573819	62586446
LRRC71_chr1_156915632_156938094	0/0	c0001	1680	170	37	34	69	5	25	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0002	1680	99	14	14	60	3	8	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	1/1	c0003	1680	76	13	17	29	7	8	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0004	1680	30	16	12	1	0	1	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0005	1680	8	7	1	0	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0006	1680	3	0	0	3	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0007	1680	3	2	0	1	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0008	1680	2	0	0	0	0	2	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0009	1680	2	2	0	0	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0010	1680	1	0	0	1	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0011	1680	1	0	0	1	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0012	1668	1	0	0	1	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0013	1680	1	0	0	0	0	1	copy fasta	LRRC71	chr1	156915632	156938094