JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC71_chr1_156915632_156938094	0/0	c0014	1680	1	0	0	0	0	1	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0015	1680	1	1	0	0	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0016	1680	1	0	0	1	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0017	1652	1	0	0	1	0	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC71_chr1_156915632_156938094	0/0	c0018	1680	1	0	0	0	1	0	copy fasta	LRRC71	chr1	156915632	156938094
LRRC72_chr7_16521825_16586568	1/1	c0001	864	364	94	65	144	13	46	copy fasta	LRRC72	chr7	16521825	16586568
LRRC72_chr7_16521825_16586568	0/0	c0002	864	37	3	7	24	3	0	copy fasta	LRRC72	chr7	16521825	16586568
LRRC72_chr7_16521825_16586568	0/0	c0003	864	3	0	0	3	0	0	copy fasta	LRRC72	chr7	16521825	16586568
LRRC72_chr7_16521825_16586568	0/0	c0004	864	3	1	2	0	0	0	copy fasta	LRRC72	chr7	16521825	16586568
LRRC72_chr7_16521825_16586568	0/0	c0005	864	2	0	0	0	0	2	copy fasta	LRRC72	chr7	16521825	16586568
LRRC72_chr7_16521825_16586568	0/0	c0006	864	1	0	0	1	0	0	copy fasta	LRRC72	chr7	16521825	16586568
LRRC73_chr6_43501968_43515346	1/1	c0001	951	355	92	74	132	16	39	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	c0002	951	4	4	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	c0003	951	3	3	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	c0004	951	1	0	0	0	0	1	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	c0005	951	1	1	0	0	0	0	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	c0006	951	1	0	0	0	0	1	copy fasta	LRRC73	chr6	43501968	43515346
LRRC73_chr6_43501968_43515346	0/0	c0007	951	1	0	0	0	0	1	copy fasta	LRRC73	chr6	43501968	43515346
LRRC74A_chr14_76821408_76875304	0/0	c0001	1416	200	47	30	93	8	22	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/1	c0002	1416	63	15	19	14	7	7	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0003	1416	52	3	7	39	2	1	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0004	1416	22	2	7	12	0	1	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	1/0	c0005	1416	13	9	2	1	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0006	1416	8	5	1	1	0	1	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0007	1416	8	1	0	7	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0008	1416	7	0	1	0	0	6	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0009	1416	7	0	0	7	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0010	1416	5	0	4	0	0	1	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0011	1416	5	5	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0012	1416	3	3	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0013	1416	2	0	0	2	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0014	1416	1	0	0	0	0	1	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0015	1416	1	1	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0016	1416	1	0	0	0	0	1	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0017	1416	1	0	1	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0018	1416	1	1	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0019	1416	1	1	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0020	1416	1	0	0	1	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0021	1416	1	1	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0022	1416	1	0	0	1	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0023	1416	1	1	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0024	1416	1	0	0	0	1	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0025	1416	1	0	0	0	0	1	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74A_chr14_76821408_76875304	0/0	c0026	1416	1	1	0	0	0	0	copy fasta	LRRC74A	chr14	76821408	76875304
LRRC74B_chr22_21040946_21069168	1/1	c0001	1179	426	80	76	207	15	46	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	c0002	1179	9	3	3	0	3	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	c0003	1179	5	3	2	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	c0004	1179	5	4	1	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	c0005	1179	2	0	0	2	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	c0006	1179	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168