JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC74B_chr22_21040946_21069168	0/0	c0007	1179	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	c0008	1179	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	c0009	1179	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	c0010	1179	1	0	0	1	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	c0011	1179	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC74B_chr22_21040946_21069168	0/0	c0012	1179	1	1	0	0	0	0	copy fasta	LRRC74B	chr22	21040946	21069168
LRRC75A_chr17_16436577_16497193	1/0	c0001	1035	207	55	44	65	7	35	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/1	c0002	1035	88	21	19	35	5	7	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	c0003	1035	19	18	1	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	c0004	1035	9	1	4	0	4	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	c0005	1035	8	0	8	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	c0006	1035	4	0	2	2	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	c0007	1035	4	0	0	4	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75A_chr17_16436577_16497193	0/0	c0008	1035	3	3	0	0	0	0	copy fasta	LRRC75A	chr17	16436577	16497193
LRRC75B_chr22_24580635_24598073	1/1	c0001	948	287	26	46	168	14	31	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0002	948	127	38	26	48	4	11	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0003	948	11	9	2	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0004	948	8	7	1	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0005	948	6	6	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0006	948	2	0	0	0	0	2	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0007	948	2	0	2	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0008	948	2	2	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0009	948	2	0	0	2	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0010	948	1	1	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0011	948	1	1	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0012	948	1	0	1	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0013	948	1	0	0	1	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0014	948	1	0	1	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0015	948	1	1	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0016	948	1	1	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0017	948	1	1	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0018	948	1	1	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0019	948	1	1	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0020	948	1	0	0	0	0	1	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0021	948	1	1	0	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0022	948	1	0	0	1	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0023	948	1	0	0	0	0	1	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC75B_chr22_24580635_24598073	0/0	c0024	948	1	0	1	0	0	0	copy fasta	LRRC75B	chr22	24580635	24598073
LRRC7_chr1_69562922_70149364	1/0	c0001	4728	76	31	12	17	4	11	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	c0002	4728	7	0	0	6	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/1	c0003	4728	6	2	2	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	c0004	4728	3	2	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	c0005	4728	2	0	0	1	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	c0006	4728	2	1	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	c0007	4728	2	2	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	c0008	4728	1	0	0	1	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	c0009	4728	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	c0010	4728	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	c0011	4728	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	c0012	4728	1	0	1	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364