JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC7_chr1_69562922_70149364	0/0	c0013	4728	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	c0014	4728	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	c0015	4728	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	c0016	4728	1	0	0	0	0	1	copy fasta	LRRC7	chr1	69562922	70149364
LRRC7_chr1_69562922_70149364	0/0	c0017	4728	1	1	0	0	0	0	copy fasta	LRRC7	chr1	69562922	70149364
LRRC8A_chr9_128877133_128923039	0/1	c0001	2433	140	15	28	64	10	22	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	1/0	c0002	2433	85	32	14	32	0	6	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0003	2433	64	31	10	18	0	5	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0004	2433	13	0	0	11	0	2	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0005	2433	13	1	3	4	3	2	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0006	2433	9	0	3	4	2	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0007	2433	5	5	0	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0008	2433	2	0	0	1	0	1	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0009	2433	2	2	0	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0010	2433	1	0	0	0	0	1	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0011	2433	1	1	0	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0012	2433	1	0	0	1	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0013	2433	1	0	0	0	1	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0014	2433	1	0	0	1	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0015	2433	1	1	0	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0016	2433	1	0	0	1	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0017	2433	1	0	0	1	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0018	2433	1	0	0	0	0	1	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0019	2433	1	1	0	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8A_chr9_128877133_128923039	0/0	c0020	2433	1	1	0	0	0	0	copy fasta	LRRC8A	chr9	128877133	128923039
LRRC8B_chr1_89519829_89602861	1/1	c0001	2412	175	51	28	66	11	17	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	c0002	2412	73	1	11	40	3	18	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	c0003	2412	41	17	12	7	0	5	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	c0004	2412	10	0	4	6	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	c0005	2412	8	8	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	c0006	2412	5	5	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	c0007	2412	3	3	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	c0008	2412	3	3	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	c0009	2412	2	2	0	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	c0010	2412	1	0	1	0	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	c0011	2412	1	0	0	1	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	c0012	2412	1	0	0	1	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8B_chr1_89519829_89602861	0/0	c0013	2412	1	0	0	1	0	0	copy fasta	LRRC8B	chr1	89519829	89602861
LRRC8C_chr1_89628120_89724533	0/1	c0001	2412	182	52	31	72	7	19	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	c0002	2412	42	5	8	23	1	5	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	c0003	2412	19	19	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	c0004	2412	8	8	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	1/0	c0005	2412	5	4	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	c0006	2412	3	0	1	2	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	c0007	2412	2	0	2	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	c0008	2412	2	1	1	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	c0009	2412	1	0	0	1	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	c0010	2412	1	0	0	1	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	c0011	2412	1	0	0	1	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8C_chr1_89628120_89724533	0/0	c0012	2412	1	0	1	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533