JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRC8C_chr1_89628120_89724533	0/0	c0013	2412	1	1	0	0	0	0	copy fasta	LRRC8C	chr1	89628120	89724533
LRRC8D_chr1_89816032_89941611	1/1	c0001	2577	204	70	44	52	6	30	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	c0002	2577	3	3	0	0	0	0	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	c0003	2577	1	1	0	0	0	0	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	c0004	2577	1	1	0	0	0	0	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8D_chr1_89816032_89941611	0/0	c0005	2577	1	1	0	0	0	0	copy fasta	LRRC8D	chr1	89816032	89941611
LRRC8E_chr19_7883510_7907016	1/1	c0001	2391	230	47	32	109	8	32	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0002	2391	39	1	8	26	1	3	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0003	2391	28	12	9	2	3	2	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0004	2391	25	2	16	0	4	3	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0005	2391	22	6	0	16	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0006	2391	13	3	1	5	0	4	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0007	2391	6	6	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0008	2391	4	4	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0009	2391	4	4	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0010	2391	3	0	0	3	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0011	2391	2	0	0	2	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0012	2391	2	0	1	0	0	1	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0013	2391	2	0	0	2	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0014	2391	1	0	0	1	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0015	2391	1	0	1	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0016	2391	1	0	0	0	1	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0017	2391	1	1	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0018	2391	1	0	0	0	0	1	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0019	2391	1	1	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0020	2391	1	0	0	1	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0021	2391	1	1	0	0	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0022	2391	1	0	0	1	0	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC8E_chr19_7883510_7907016	0/0	c0023	2391	1	0	0	0	1	0	copy fasta	LRRC8E	chr19	7883510	7907016
LRRC9_chr14_59915144_60071817	0/1	c0001	4485	158	28	36	70	9	14	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	1/0	c0002	4485	97	28	14	46	0	8	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0003	4485	21	0	0	21	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0004	4485	10	0	3	4	1	2	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0005	4485	8	5	1	0	0	2	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0006	4485	5	0	0	5	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0007	4485	4	0	0	4	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0008	4485	3	0	0	2	0	1	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0009	4485	2	0	0	2	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0010	4485	2	2	0	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0011	4485	2	0	0	0	2	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0012	4485	2	0	0	0	0	2	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0013	4485	2	2	0	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0014	4485	1	0	0	0	0	1	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0015	4485	1	0	1	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0016	4485	1	0	0	1	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0017	4485	1	0	1	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0018	4485	1	1	0	0	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRC9_chr14_59915144_60071817	0/0	c0019	4485	1	0	0	1	0	0	copy fasta	LRRC9	chr14	59915144	60071817
LRRCC1_chr8_85102238_85151080	1/1	c0001	3099	229	34	39	117	6	31	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	c0002	3099	41	27	3	10	0	1	copy fasta	LRRCC1	chr8	85102238	85151080