JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD12_chr18_9131781_9290985	0/0	c0015	6189	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0016	6189	1	0	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0017	6189	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0018	6189	1	0	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0019	6189	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0020	6189	1	0	0	0	0	1	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0021	6189	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0022	6189	1	0	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0023	6189	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0024	6189	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0025	6189	1	0	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0026	6189	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0027	6189	1	0	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0028	6189	1	0	0	1	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	c0029	6189	1	0	0	0	0	1	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD13A_chr12_109994430_110044763	1/1	c0001	1773	163	25	41	58	9	28	copy fasta	ANKRD13A	chr12	109994430	110044763
ANKRD13A_chr12_109994430_110044763	0/0	c0002	1773	71	43	16	7	1	4	copy fasta	ANKRD13A	chr12	109994430	110044763
ANKRD13A_chr12_109994430_110044763	0/0	c0003	1773	35	12	1	20	0	2	copy fasta	ANKRD13A	chr12	109994430	110044763
ANKRD13A_chr12_109994430_110044763	0/0	c0004	1773	2	2	0	0	0	0	copy fasta	ANKRD13A	chr12	109994430	110044763
ANKRD13A_chr12_109994430_110044763	0/0	c0005	1773	1	0	0	1	0	0	copy fasta	ANKRD13A	chr12	109994430	110044763
ANKRD13A_chr12_109994430_110044763	0/0	c0006	1773	1	1	0	0	0	0	copy fasta	ANKRD13A	chr12	109994430	110044763
ANKRD13A_chr12_109994430_110044763	0/0	c0007	1773	1	1	0	0	0	0	copy fasta	ANKRD13A	chr12	109994430	110044763
ANKRD13B_chr17_29588132_29619761	1/1	c0001	1881	328	82	71	111	16	46	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13B_chr17_29588132_29619761	0/0	c0002	1881	4	3	1	0	0	0	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13B_chr17_29588132_29619761	0/0	c0003	1881	3	3	0	0	0	0	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13B_chr17_29588132_29619761	0/0	c0004	1881	3	3	0	0	0	0	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13B_chr17_29588132_29619761	0/0	c0005	1881	2	0	0	2	0	0	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13B_chr17_29588132_29619761	0/0	c0006	1881	1	0	0	1	0	0	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13B_chr17_29588132_29619761	0/0	c0007	1881	1	1	0	0	0	0	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13B_chr17_29588132_29619761	0/0	c0008	1881	1	0	0	1	0	0	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13B_chr17_29588132_29619761	0/0	c0009	1881	1	0	0	1	0	0	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13B_chr17_29588132_29619761	0/0	c0010	1881	1	1	0	0	0	0	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13B_chr17_29588132_29619761	0/0	c0011	1881	1	1	0	0	0	0	copy fasta	ANKRD13B	chr17	29588132	29619761
ANKRD13C_chr1_70253999_70359722	1/1	c0001	1626	318	85	43	144	16	28	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	c0002	1626	26	1	6	14	0	5	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	c0003	1626	2	0	2	0	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	c0004	1626	1	0	0	1	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	c0005	1626	1	0	0	0	0	1	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	c0006	1626	1	0	0	1	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	c0007	1626	1	0	0	1	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	c0008	1626	1	0	1	0	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	c0009	1626	1	0	0	1	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13D_chr11_67284303_67307484	0/1	c0001	1818	246	66	41	102	10	26	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	1/0	c0002	1818	45	18	3	22	0	1	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0003	1818	18	0	16	2	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0004	1818	6	0	0	6	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0005	1818	3	0	0	3	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0006	1818	2	2	0	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0007	1818	1	1	0	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0008	1818	1	0	0	1	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484