JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRCC1_chr8_85102238_85151080	0/0	c0003	3099	14	0	4	4	1	5	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	c0004	3099	12	5	5	0	1	1	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	c0005	3099	12	12	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	c0006	3099	4	4	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	c0007	3099	3	3	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	c0008	3099	3	3	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	c0009	3099	1	0	1	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	c0010	3099	1	0	0	1	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	c0011	3099	1	0	0	1	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	c0012	3099	1	1	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	c0013	3099	1	1	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	c0014	3099	1	0	0	1	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	c0015	3099	1	1	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRCC1_chr8_85102238_85151080	0/0	c0016	3099	1	1	0	0	0	0	copy fasta	LRRCC1	chr8	85102238	85151080
LRRD1_chr7_92139842_92184142	1/1	c0001	2583	209	34	28	126	4	15	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0002	2583	119	47	25	35	2	10	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0003	2583	6	0	0	6	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0004	2583	4	0	0	4	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0005	2583	3	3	0	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0006	2583	2	2	0	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0007	2583	2	2	0	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0008	2583	2	0	2	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0009	2583	1	1	0	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0010	2583	1	0	1	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0011	2583	1	0	0	1	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0012	2583	1	1	0	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0013	2583	1	0	0	0	0	1	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0014	2583	1	0	0	1	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0015	2583	1	0	0	1	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0016	2583	1	0	0	1	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0017	2583	1	1	0	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0018	2583	1	1	0	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0019	2583	1	0	0	1	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0020	2583	1	0	1	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRD1_chr7_92139842_92184142	0/0	c0021	2583	1	0	1	0	0	0	copy fasta	LRRD1	chr7	92139842	92184142
LRRFIP1_chr2_237622587_237786643	1/1	c0001	1923	149	51	24	45	6	21	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	c0002	1923	98	23	15	48	1	11	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	c0003	1923	20	0	1	13	2	4	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	c0004	1923	3	3	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	c0005	1923	2	2	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	c0006	1923	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	c0007	1923	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	c0008	1923	1	0	0	0	1	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP1_chr2_237622587_237786643	0/0	c0009	1923	1	1	0	0	0	0	copy fasta	LRRFIP1	chr2	237622587	237786643
LRRFIP2_chr3_37047626_37179582	1/0	c0001	2166	242	63	51	86	10	31	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	c0002	2166	7	7	0	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/1	c0003	2166	3	0	2	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	c0004	2166	2	2	0	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	c0005	2166	2	2	0	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	c0006	2166	2	1	1	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582