JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRFIP2_chr3_37047626_37179582	0/0	c0007	2166	1	0	1	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	c0008	2166	1	0	0	0	0	1	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	c0009	2166	1	0	0	1	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	c0010	2166	1	0	1	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	c0011	2166	1	1	0	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	c0012	2166	1	1	0	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	c0013	2166	1	1	0	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	c0014	2166	1	0	0	1	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	c0015	2166	1	1	0	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRFIP2_chr3_37047626_37179582	0/0	c0016	2166	1	1	0	0	0	0	copy fasta	LRRFIP2	chr3	37047626	37179582
LRRIQ1_chr12_85031351_85250105	0/1	c0001	5169	77	35	10	26	2	3	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	1/0	c0002	5169	64	6	10	35	5	7	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0003	5168	32	2	8	19	2	1	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0004	5168	14	2	7	0	1	4	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0005	5169	6	6	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0006	5169	5	0	2	3	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0007	5169	4	2	1	0	0	1	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0008	5168	4	4	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0009	5169	3	3	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0010	5169	3	0	2	0	1	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0011	5168	2	2	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0012	5169	2	2	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0013	5169	2	2	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0014	5168	1	0	0	0	1	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0015	5169	1	0	1	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0016	5169	1	1	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0017	5169	1	1	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0018	5169	1	1	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0019	5169	1	1	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0020	5169	1	1	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0021	5169	1	0	1	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0022	5169	1	1	0	0	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ1_chr12_85031351_85250105	0/0	c0023	5169	1	0	0	1	0	0	copy fasta	LRRIQ1	chr12	85031351	85250105
LRRIQ3_chr1_74021015_74203176	0/1	c0001	1875	153	34	40	52	9	17	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	1/0	c0002	1875	46	24	5	7	1	8	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0003	1875	22	0	7	12	0	3	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0004	1875	16	1	4	8	0	3	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0005	1875	10	9	1	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0006	1875	10	8	2	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0007	1875	3	0	0	3	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0008	1875	2	1	1	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0009	1875	2	2	0	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0010	1875	1	0	0	0	1	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0011	1875	1	0	0	1	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0012	1875	1	0	0	1	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0013	1875	1	0	0	0	0	1	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0014	1875	1	0	1	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0015	1875	1	1	0	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0016	1875	1	0	0	1	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0017	1875	1	0	1	0	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176