JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRIQ3_chr1_74021015_74203176	0/0	c0018	1875	1	0	0	0	1	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ3_chr1_74021015_74203176	0/0	c0019	1875	1	0	0	1	0	0	copy fasta	LRRIQ3	chr1	74021015	74203176
LRRIQ4_chr3_169807870_169842773	0/0	c0001	1683	203	43	27	115	5	13	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	1/1	c0002	1683	109	22	20	47	6	12	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0003	1683	19	0	8	5	3	3	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0004	1683	17	11	2	0	0	4	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0005	1683	10	0	3	6	0	1	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0006	1683	6	6	0	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0007	1683	5	4	1	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0008	1683	3	0	3	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0009	1683	2	2	0	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0010	1683	2	2	0	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0011	1683	2	0	0	2	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0012	1683	1	0	0	1	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0013	1683	1	0	0	1	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0014	1683	1	0	0	0	0	1	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0015	1683	1	1	0	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0016	1683	1	0	0	1	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0017	1683	1	1	0	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0018	1683	1	1	0	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRIQ4_chr3_169807870_169842773	0/0	c0019	1683	1	1	0	0	0	0	copy fasta	LRRIQ4	chr3	169807870	169842773
LRRK1_chr15_100914357_101083257	0/0	c0001	6048	51	1	12	24	3	11	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0002	6048	33	2	5	11	4	11	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0003	6048	27	1	7	16	0	3	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0004	6048	15	5	0	4	2	4	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0005	6048	15	1	4	6	0	4	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0006	6048	8	1	3	2	0	2	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0007	6048	8	4	4	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0008	6048	8	1	5	1	0	1	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0009	6048	7	0	0	7	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0010	6048	6	6	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0011	6048	5	5	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0012	6048	5	0	1	4	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0013	6048	4	4	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0014	6048	4	1	2	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0015	6048	4	0	0	4	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0016	6048	3	3	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0017	6048	3	2	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0018	6048	3	0	1	1	0	1	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0019	6048	3	0	0	3	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0020	6048	3	0	0	3	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/1	c0021	6048	3	0	2	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	1/0	c0022	6048	3	2	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0023	6048	3	0	0	3	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0024	6048	2	0	0	2	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0025	6048	2	2	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0026	6048	2	2	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0027	6048	2	0	2	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0028	6048	2	2	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0029	6048	2	1	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257