JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRK1_chr15_100914357_101083257	0/0	c0080	6048	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0081	6048	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0082	6048	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0083	6048	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0084	6048	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0085	6048	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0086	6048	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0087	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0088	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0089	6048	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0090	6048	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0091	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0092	6048	1	0	0	0	0	1	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0093	6048	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0094	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0095	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0096	6048	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0097	6048	1	0	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0098	6048	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0099	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0100	6048	1	0	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0101	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0102	6048	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0103	6048	1	0	1	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0104	6048	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0105	6048	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0106	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0107	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0108	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0109	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0110	6048	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0111	6048	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0112	6048	1	0	0	0	1	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0113	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0114	6048	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0115	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0116	6063	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0117	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0118	6048	1	0	0	1	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0119	6048	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK1_chr15_100914357_101083257	0/0	c0120	6048	1	1	0	0	0	0	copy fasta	LRRK1	chr15	100914357	101083257
LRRK2_chr12_40219997_40374285	0/0	c0001	7584	74	5	14	42	4	9	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	c0002	7584	72	13	9	47	0	3	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/1	c0003	7584	29	1	5	19	1	2	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	c0004	7584	25	10	4	1	2	8	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	c0005	7584	23	6	7	8	0	2	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	c0006	7584	22	1	3	16	0	2	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	c0007	7584	11	0	2	6	0	3	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	c0008	7584	7	2	3	1	0	1	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	c0009	7584	7	5	2	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285