JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRK2_chr12_40219997_40374285	0/0	c0060	7584	1	1	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	c0061	7584	1	0	0	1	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	c0062	7584	1	1	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	c0063	7584	1	0	0	1	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	c0064	7584	1	1	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRK2_chr12_40219997_40374285	0/0	c0065	7584	1	1	0	0	0	0	copy fasta	LRRK2	chr12	40219997	40374285
LRRN1_chr3_3794431_3854834	0/1	c0001	2151	153	41	37	53	5	16	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0002	2151	86	16	3	60	1	6	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0003	2151	78	9	5	57	0	7	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0004	2151	42	12	13	15	0	2	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0005	2151	9	3	0	5	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0006	2151	8	0	3	1	0	4	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	1/0	c0007	2151	7	6	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0008	2151	7	6	1	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0009	2151	7	0	0	7	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0010	2151	3	0	1	0	2	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0011	2151	3	0	2	0	1	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0012	2151	2	0	1	0	1	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0013	2151	2	0	2	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0014	2151	2	2	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0015	2151	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0016	2151	1	0	0	0	1	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0017	2151	1	0	0	0	1	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0018	2151	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0019	2151	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0020	2151	1	1	0	0	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0021	2151	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0022	2151	1	0	0	0	1	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0023	2151	1	0	0	0	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0024	2151	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0025	2151	1	0	0	0	0	1	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0026	2151	1	0	0	0	1	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN1_chr3_3794431_3854834	0/0	c0027	2151	1	0	0	1	0	0	copy fasta	LRRN1	chr3	3794431	3854834
LRRN2_chr1_204612170_204690738	1/1	c0001	2142	169	75	22	59	4	7	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0002	2142	75	1	15	39	6	14	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0003	2142	61	2	6	40	3	10	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0004	2142	4	0	3	0	1	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0005	2142	2	0	1	0	1	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0006	2142	2	2	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0007	2142	2	2	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0008	2142	2	0	0	1	0	1	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0009	2142	1	1	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0010	2142	1	0	1	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0011	2142	1	1	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0012	2142	1	1	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0013	2142	1	0	0	1	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0014	2142	1	0	1	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0015	2142	1	1	0	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0016	2142	1	0	0	0	1	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0017	2142	1	0	1	0	0	0	copy fasta	LRRN2	chr1	204612170	204690738