JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LRRN2_chr1_204612170_204690738	0/0	c0018	2142	1	0	0	1	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN2_chr1_204612170_204690738	0/0	c0019	2142	1	0	0	1	0	0	copy fasta	LRRN2	chr1	204612170	204690738
LRRN3_chr7_111086127_111130454	1/1	c0001	2127	210	41	48	85	8	26	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	c0002	2127	27	22	2	0	2	1	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	c0003	2127	10	9	1	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	c0004	2127	6	0	0	6	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	c0005	2127	4	1	2	1	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	c0006	2127	4	3	0	0	0	1	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	c0007	2127	2	2	0	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	c0008	2127	1	1	0	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	c0009	2127	1	1	0	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	c0010	2127	1	1	0	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	c0011	2127	1	1	0	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	c0012	2127	1	0	0	1	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	c0013	2127	1	0	1	0	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN3_chr7_111086127_111130454	0/0	c0014	2127	1	0	0	1	0	0	copy fasta	LRRN3	chr7	111086127	111130454
LRRN4CL_chr11_62681406_62694530	1/1	c0001	717	345	90	70	139	10	34	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4CL_chr11_62681406_62694530	0/0	c0002	717	2	2	0	0	0	0	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4CL_chr11_62681406_62694530	0/0	c0003	717	1	0	0	1	0	0	copy fasta	LRRN4CL	chr11	62681406	62694530
LRRN4_chr20_6035546_6059060	1/0	c0001	2223	165	30	32	78	7	17	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/1	c0002	2223	93	2	18	62	2	8	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0003	2223	56	7	23	20	1	5	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0004	2223	15	15	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0005	2223	10	10	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0006	2223	10	0	1	9	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0007	2223	7	0	0	7	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0008	2223	5	5	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0009	2223	5	5	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0010	2223	4	4	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0011	2223	4	4	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0012	2223	4	0	0	4	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0013	2223	3	3	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0014	2223	3	0	0	1	0	2	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0015	2223	2	0	0	0	0	2	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0016	2223	2	0	0	2	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0017	2223	2	2	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0018	2223	2	2	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0019	2223	1	1	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0020	2223	1	1	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0021	2223	1	0	0	0	0	1	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0022	2223	1	1	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0023	2223	1	0	0	0	0	1	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0024	2223	1	1	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0025	2223	1	0	0	1	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0026	2223	1	0	0	1	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0027	2223	1	1	0	0	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRN4_chr20_6035546_6059060	0/0	c0028	2223	1	0	0	1	0	0	copy fasta	LRRN4	chr20	6035546	6059060
LRRTM1_chr2_80296878_80309752	1/1	c0001	1569	219	45	51	81	11	29	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	c0002	1569	163	30	24	98	0	11	copy fasta	LRRTM1	chr2	80296878	80309752
LRRTM1_chr2_80296878_80309752	0/0	c0003	1569	7	7	0	0	0	0	copy fasta	LRRTM1	chr2	80296878	80309752