JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD13D_chr11_67284303_67307484	0/0	c0009	1818	1	0	0	1	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0010	1818	1	1	0	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0011	1818	1	0	1	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0012	1818	1	1	0	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0013	1818	1	0	0	0	0	1	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0014	1818	1	0	0	1	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0015	1818	1	0	0	0	0	1	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0016	1818	1	0	0	1	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0017	1818	1	0	0	1	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0018	1818	1	1	0	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0019	1818	1	0	1	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	c0020	1818	1	0	0	0	0	1	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD16_chr10_5856616_5894893	0/1	c0001	1086	276	59	67	104	16	29	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	c0002	1086	29	3	3	22	0	1	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	1/0	c0003	1086	27	4	2	8	1	11	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	c0004	1086	20	0	0	15	0	5	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	c0005	1086	18	16	2	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	c0006	1086	6	5	0	0	1	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	c0007	1086	4	0	0	4	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	c0008	1086	3	0	0	3	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	c0009	1086	2	1	1	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	c0010	1086	2	0	2	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	c0011	1086	1	1	0	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	c0012	1086	1	1	0	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	c0013	1086	1	0	0	1	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	c0014	1086	1	0	0	1	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	c0015	1086	1	0	1	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD17_chr4_73068376_73263798	0/0	c0001	7812	123	40	30	41	7	5	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0002	7812	83	15	16	38	3	11	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/1	c0003	7812	58	2	9	35	2	9	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0004	7812	3	3	0	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0005	7812	3	0	0	3	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0006	7812	3	0	0	0	0	3	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0007	7812	2	2	0	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0008	7812	1	1	0	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0009	7812	1	0	0	1	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0010	7812	1	0	0	1	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0011	7812	1	0	0	1	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0012	7812	1	0	1	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	1/0	c0013	7812	1	0	0	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0014	7812	1	0	0	0	0	1	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0015	7812	1	0	1	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0016	7812	1	0	0	1	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0017	7812	1	0	0	1	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0018	7812	1	0	1	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0019	7812	1	1	0	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0020	7812	1	1	0	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0021	7812	1	1	0	0	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0022	7812	1	0	0	0	0	1	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD17_chr4_73068376_73263798	0/0	c0023	7812	1	0	0	1	0	0	copy fasta	ANKRD17	chr4	73068376	73263798