JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LSAMP_chr3_115797374_116450487	0/0	c0004	1017	1	0	0	0	0	1	copy fasta	LSAMP	chr3	115797374	116450487
LSAMP_chr3_115797374_116450487	0/0	c0005	1017	1	1	0	0	0	0	copy fasta	LSAMP	chr3	115797374	116450487
LSG1_chr3_194635791_194677191	0/0	c0001	1977	150	14	35	79	5	17	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	1/0	c0002	1977	101	47	21	22	3	7	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/1	c0003	1977	83	4	15	55	1	7	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0004	1977	39	13	7	9	0	10	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0005	1977	6	0	0	6	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0006	1977	4	3	0	0	1	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0007	1977	3	3	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0008	1977	3	2	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0009	1977	2	2	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0010	1977	2	0	2	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0011	1977	2	2	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0012	1977	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0013	1977	1	0	1	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0014	1977	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0015	1977	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0016	1977	1	0	0	0	0	1	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0017	1977	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0018	1977	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0019	1977	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0020	1977	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0021	1977	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0022	1977	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0023	1977	1	0	0	1	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSG1_chr3_194635791_194677191	0/0	c0024	1977	1	1	0	0	0	0	copy fasta	LSG1	chr3	194635791	194677191
LSM10_chr1_36388436_36402908	1/1	c0001	372	422	95	71	188	18	48	copy fasta	LSM10	chr1	36388436	36402908
LSM10_chr1_36388436_36402908	0/0	c0002	372	4	0	2	2	0	0	copy fasta	LSM10	chr1	36388436	36402908
LSM10_chr1_36388436_36402908	0/0	c0003	372	2	0	0	2	0	0	copy fasta	LSM10	chr1	36388436	36402908
LSM10_chr1_36388436_36402908	0/0	c0004	372	2	0	1	0	0	1	copy fasta	LSM10	chr1	36388436	36402908
LSM10_chr1_36388436_36402908	0/0	c0005	372	1	1	0	0	0	0	copy fasta	LSM10	chr1	36388436	36402908
LSM10_chr1_36388436_36402908	0/0	c0006	372	1	0	0	0	0	1	copy fasta	LSM10	chr1	36388436	36402908
LSM11_chr5_157738712_157765709	1/0	c0001	1083	332	76	77	130	12	36	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/1	c0002	1083	89	10	9	56	2	11	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	c0003	1083	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	c0004	1083	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	c0005	1083	1	0	0	0	0	1	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	c0006	1083	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	c0007	1083	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	c0008	1083	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	c0009	1083	1	0	0	1	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	c0010	1083	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM11_chr5_157738712_157765709	0/0	c0011	1083	1	1	0	0	0	0	copy fasta	LSM11	chr5	157738712	157765709
LSM12_chr17_44029328_44071671	1/1	c0001	588	290	80	62	114	8	24	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	c0002	588	4	4	0	0	0	0	copy fasta	LSM12	chr17	44029328	44071671
LSM12_chr17_44029328_44071671	0/0	c0003	588	4	4	0	0	0	0	copy fasta	LSM12	chr17	44029328	44071671
LSM14A_chr19_34167504_34234288	0/1	c0001	1392	264	72	58	83	18	32	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	c0002	1392	42	21	13	3	0	5	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	c0003	1392	8	1	3	4	0	0	copy fasta	LSM14A	chr19	34167504	34234288
LSM14A_chr19_34167504_34234288	0/0	c0004	1392	1	0	0	0	0	1	copy fasta	LSM14A	chr19	34167504	34234288